RNA id: XM_021571989.2


Basic Information

Item Value
RNA id XM_021571989.2
length 3249
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110496218
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40080215 ~ 40093772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCGGAAGTGTAGAGCGGAGCAGACCCACAAGAGGGAAAAAGAAAAAAATCGAGGAAAAAAAATTCGGAGAATCTGAGGGTTTGGGCGGATTTGGACTGAGTTTCCGAACTGTCCCAACCCGAGGGAGCCCCAGGGTTGAGAGGGAATCGCCAACACCGAAATAATGGAAGAATCCCATTTCAACTCATCATACTTTTGGTCTCCCGTTCCCACAGTACAAGGACAGATTGAAAACGCCATGTTCCTGAACAAGATGAAGGAGCAGTTGGGTCCGGACAATAAGGGTTCTCCGTCGTTCCCTCACTCCTCACACTATCCCGCCGCCGTGCTCACCATGGACACGGGAGGCCGGGTGGTGCCCAAACAGGAAGGTGGAGGCGGTGGTGTCCAATTGAACGCCGTAGGCGGTCACCTGCACCAGCCGCACACCTCACAGAATATCACGGTGGTGCCCGTCCAGTCCACTGGCATCATGACGGCAGcggGGCTAGTGATAACCACTCCCCAAGGCACCCTGGTCTCTCAACCCACCTCCACACAATCTTTTGTGCCCGGACCCCCTGCCAACACCATGATAGTGTCCGCACTACACCCCACAAACACAGAGAGCAGCCAgcactcctctctctacttctacaGCCACAACAAGAAAGAGGATTTGGTCATCCCTCCTGTTGTCATGCCAACGCCCGGGAAGCGGGGCAGGAAGAAGAAGTCGATGATGCAGAGGGCTGGCGCCAACCTCCCCCCAGGAAGTGATGCGTTGATTCTGGCTCACCTGGCTGCTGGGGGGCAGCACCACACTGCAGACCATTATGACTTATCAAATGATGAGGATGAGCATGGTAACAAAGACGGGACCAAATCATACAGGTGCCGGATGTGTGCGGTGACGTTCTTCAGCAAGTCGGACATGCAGATCCACGCCAAGTCTCACACGGAGGCCAAGCCGCACAAGTGCCCCCACTGCTCCAAGTCGTTCGCCAACTCCAGCTACCTGTCCCAGCACATCCGCATCCACAGCGGGGCCAAGCCCTACACCTGCTCCTTCTGCCAGAAAACATTCAGGCAGCTCAGTCACTTACAGCAGCACACACGAAACCACACTGAGGGCAAACCGCACAAGTGTCCCCACTGCTCCAAATCGTTCGCCAACTCCAGCTACCTGGCCCAGCACATCCGCATCCACAGCGGGGCCAAGCCCTACACCTGCTCCTTCTGCCAGAAAACATTCAGGCAGCTCAGTCACTTACAGCAGCACCACAGGATTCACACTGGGGACCGACCTTACAAGTGCATCCATCCTGGCTGCGAGAAAGCGTTCACTCAGCTGTCCAACTTGCAGTCTCACCGCCGGCAGCACAACAAAGACAAGCCGTACAAGTGCCACAACTGCAACCGCGGTTACACAGACGCGGCCAGTCTGGAGGTGCACCTGTCCACTCACACGGTCAAACACGCCAAGCTCTACTCCTGTGGCCTGTGCAACCGCGCCTACACCTCGgaGACCTACCTGATGAAACACATGCGGAAGCACAACCCGGACCCCCTCACAGTGGCGGCTGCCGTCGCCGCCCAGCAGGCCCAGGGTCACACTCCTGGAGGAGCGGGCAGGGGGAGGGGTCGTGGCAGAGGAAGCGGGGCAAACATAGGAGGCGGTGGTCCCGGAGGGGCAGGTCAGAACCCAGGGCAGAACCAGCCCCAGAACCCCAACAACCCTCAGCAAGGCAGCTACCCGCAGACGGAGGGCGTGCCGTGCCCCTTCGACCTGCACCAGTACAAGACGGTCAGCGTCACCGACCTGTCGGCCCATAAGGACCTCTGCCTGACCGTGTCCACCTCAGCCATTCAGGTGGAGCACATGAACTCATAGAGCGAGAGGATGGACagaatggagagggagggagggagtggagccTGGTGTCACTTTTTAAatgggaggatgggctcattgtaatggctggaatggaacgtGTGTCAAACACATTAAATGTGTTTGAAACCAGCTATTTCAATGAGGCAGTCCACTGAtttctcctcccaccagcctccactgggagGGAGAAAGTACTAAGTAAAAACTACACTGCCTTGGGGTTGGCGAAGGAATGAATGGAAGAATGAGGTTTGGCGATGCAAGACCCAATCAGAGGATAAGGAAAGGAGGGCGTGAAGGGACTACTTGAGATGAAGAGGAAGCATGGGATATGTAGTCCAGTATTGAATGAAGAGATGATATATGAATGGTTCAAAGAATGCACTTAATGAGAAGACAtcgaaaagggagagagagagaacaaaaaatggggggggggggtctgatatAAAGAAGGCACTTGATCAATCTCGTATTTTTTCGGTTTCTCATCGTTTCATTTAGTTGTTgtatgtatattatcatatatgtatgtatttttCTACCAACAGTGGAATGTGTCAGCGAACGGCGTGGGAAAGCAAAAAGATTGTGCAAGGAATGTGAGTGAGAAGAAACATCTAGGAACAGCAGATTTTGTATTTAAGAAGGATCATTTTGTATAttccccaaaacatttttgcaaagcaaggggtgagggggagaaaggagcATCTTGTTGAAACATGGAAATGGCTGTCAGGTACTGTTAACAAGTTTTTTTAAGTTTAGTTTTTTAAACCTTTCATACTGAATATTGCATTATTCTTATTGTGTCAATGTTATCCTCATTATTATCAATTGGAAGATACTGTAATCTATGTAGATATATATAGAAATGATTTTTTTCATTCAAAAAAAAGGGAATGATGTACTTCCTAATCTCTGCCTCTGTAAAGTAAACCAGAAAACAAGAACTCCAAAAGTAACGAATCGTTGACATGTATTTCTAACCCGTCCAATCACAGAGCTCTATTCTGTTCTCTCTATTTATAGAGCAGGCTCGTGATTGGCCGGTTATCTTATGTATACTCCTTGTACTTTGTGTCTTTTGAAATAACACAGTTCTCAATATTCTTATTAGTGTCGTTATTATTGCTcctaatactgttattaactacCCTTATGCTACACGTGCTGTATATGCATAGTACACATTCATCTGAAGAGACTGTTTCTCTTTGTAAGGACAATAAAGTGAGACAGTCGGAGATGACAAGCTTGCTGTCAGATTCTCCTTTTACTGCATGCAGACATGCTGTGGAAAGTCAGTTTGGAGGTATTGTatcaatgtacagtacataggtCAATTATAcattaaaataatataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771634 lncRNA downstream 26614 40053375 ~ 40053601 (-) True G1548270
TU1771621 lncRNA downstream 49712 40029984 ~ 40030503 (-) True LOC110496213
TU1771616 lncRNA downstream 54773 40025236 ~ 40025442 (-) True G1548260
TU1771613 lncRNA downstream 58217 40021788 ~ 40021998 (-) True G1548257
TU1770872 lncRNA downstream 155222 39924639 ~ 39924993 (-) True G1547609
TU1771691 lncRNA upstream 61066 40154838 ~ 40169209 (-) True G1548317
TU1771698 lncRNA upstream 77087 40170859 ~ 40182138 (-) True G1548323
TU1771700 lncRNA upstream 77717 40171489 ~ 40172837 (-) True G1548324
TU1771709 lncRNA upstream 112867 40206639 ~ 40207042 (-) True G1548331
TU1771755 lncRNA upstream 141348 40235120 ~ 40239085 (-) True G1548376
XM_021571987.2 mRNA downstream 16666 40056394 ~ 40063549 (-) True LOC110496215
XM_021571985.2 mRNA downstream 31778 40038543 ~ 40048437 (-) True LOC110496214
XM_021571986.2 mRNA downstream 32049 40038543 ~ 40048166 (-) False LOC110496214
XM_036952773.1 mRNA downstream 45651 40029650 ~ 40034564 (-) False LOC110496213
XM_036952771.1 mRNA downstream 60674 39974235 ~ 40019541 (-) True pvrl2l
XM_036952780.1 mRNA upstream 17241 40111013 ~ 40122549 (-) False LOC110496222
XM_036952779.1 mRNA upstream 17241 40111013 ~ 40122871 (-) False LOC110496222
XR_005037471.1 mRNA upstream 17241 40111013 ~ 40122871 (-) True LOC110496222
NM_001124553.1 mRNA upstream 31793 40125565 ~ 40130195 (-) True tapbp.1
trnaa-ugc-138 mRNA upstream 93370 40187142 ~ 40187215 (-) True trnaa-ugc-138
TU1770684 other downstream 391534 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 432201 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 433682 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 449117 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 1292414 38776284 ~ 38787801 (-) True G1546396
TU1771745 other upstream 292198 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 546403 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 811915 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1569664 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1574488 41668260 ~ 41671514 (-) True LOC110496277

Expression Profile