RNA id: XM_036952780.1


Basic Information

Item Value
RNA id XM_036952780.1
length 3435
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110496222
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40111013 ~ 40122871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATACATCTGCATTTCATACATAAAGATAGTAAAAGTATTTGTTTACATGTTGTCTTTGTCATACCCCTACCATTTTAACCCCGGAGAGATTGGCGCTTTCCTGAGCagcagctaacattagcttgttGCTAACTGAGCAAAGAATAGTCCCTATCTGATGGCGGTTGCCTCAGCAGTAGTGATGGACAGCATTGTaatccttgatgatgatgaggaagaggagaggcctCAACCCTCTTCATCCACCTCCTCTAAACCCTCAGCCAATCATCGTACTCCCCCAAAAATCCAACAGCCCGCTCCAACTCACATCACCCAATCTCCTTTTGCCACAGTGAAGAAAGAAAGCCATGTTCTTAAAGCAGAAAACCAGAAGCTATTTACTGAGTTTGTAGAGTACTGCTCGGCCCACACACAGGACTGCCCTGAGGTCATGACCTTCCTGCACGCCAAGCACTCAAAGGCCTCGCCGAACTTCCTGGCCTCGGTGGAGTTCCGCAACACGCTGGGCCGCTGCCTGACGCGTGCCCAGGCCCGCCGCACCAAGACCTTTGTCTACATCAACGAGCTGTGCACCGTCCTCAAACAGCACTCGGACAAGAGGAGGCAGACTGTCGTGAAGGTGGAGCCTACCGCCGGGGAGAAGAAGGAGATGAAAGAGGAGGCACCGACAGAGGAGCTACCGTCTACCTCGGGGCAGCAGGAAGAGaagaacgaggaggaggaggagaggaagacgaaGAAGGCTTCCCGGAGACAGaTTGCGTACCTGGAGAACCTGCTGAAGATGTACAATGATGAGATCCGGCGGCTGCAGGAGAAGGAGCTGAGTGTCAACGAGCTAGAAGAGGAGGACTCCAGCTACATCCAGGAGCACAAGCTCAAGCGCAAGatgaTGAAGATCTATGATAAGCTCTGTGAGCTGAAGGGCTGCAGCAGTCTGACAGGCCGAGTGATCGAGCAGAGGATCCAATACAAAGGGACACGCTACCCTGAGGTCAACAGAAAGATTGAGCGTTTCATCAACAGTCCCGAGGCCCAGCTGAATCCCCCCGACTACACAGACATCCTGCAACATATCCGCCGGGCCAATGAGCGCCACGGCCTCAACCTCAGCAAGAAGCAGCTGACCCAGATCGCTCAGGACGCCTTCCGCGAGACCGGCAACCGCCTACAGGAGAGACGCCACCTCGACATGGTCTACAACTTCGGCTCGCACCTCACAGACCTCTACAAGCCCGCCACTGACCCTGCCCTGTTGGACCCCACGTTGGCCCGTAAGCTGCGCTCTAACCGGGAGGTGGCTCTCTCCAGCCTGGAGCAGGTCATCTCCAAATACGCCCTGAAGCAGGatgacacagaggaggaggagagggctaaacggatagagagagagaggcagaagaaagagGGTCAGTCATCGGCGCTGGAGGCCACCACAGCCGATGACAATCCCCTGAAGAAGGGAGAGGATGGTGAGGAGCAagttgaggaggaggatgatgatgaagacGACGAGTCGTCTGATCCAGACATCGAGGAGGAGATCCAGGCCAGCAAATCACAAGCAGGGCCAGaggatgatgaggaggacaACGAAGTAGAGGCAGCAAACAAGAGTGAGAACGAGGTGGATGGTGGGAGTGACAGAGaccaggatggaggagaggatgaagagaaCGCTGAGGTGGACAAAGACTCCGTGATGAGCGGAATCAGCCCCATTTCCCGGGTTGACACCCCACGGATCTCCTCCTTAGTCGACGAATCCCCCACAGACAGCCCCAGCCAATCAGAGGCGATGGAGGTAGACAAGGGGAACGAATCATCCAATACCAACCTGACAAAGGAGGACATTGTTTCCTCCAATCACGTTTCAGCTGTGTCAATAAGCACTAGTGTGGAAACGAAGGACTCCTCAGCCTCCCCCATGGCGGCGAATCAGGTCTCTTTGCCACCGTCACCGGTGCTGATTTCGACCAATGAGGACTCCTGCACGGTCATCACTGAGACGAGGTCAGCGAATTGCAGCCCCAGGCCACCCAGTCCCAAAGACACCTGCAGaggcaggaagagaaagaggaaagaggaggaggtgaaatCCAGGAAGTCTTACAACGGGGTTCTAAGGCACCACAATGGGAGTGACCGTGACCTCCCTCTGGACATGGATGTGGTGACCAGTAGCCCCCTGCAGGCGGACTCCACCAGGGCAGACTCTCCCACCCAGGAGATGGTCACCAGCTCCCAGTGCACCCCGCCTCCCAAGAAAAACAAGGTCAACGTGGCCACTCAATGTGACCCGGACGAAGTGATCGTCCTATCGGACTCGGAATGACCTCTGCCCCAACCCTACTGGGTGTTCAGGCTTCCCATTGCTAGCCTGGAACCAGGTCTGTTTATgccgcacaaacagatctgggaccaggccatcCCATTACTGCCTCTTGACTTCCAAATCAGTGCCTGCTAATGTGAACTCTTGAAAATGCACACATTTTCAGATGGGAGAGAGCAAACTTTTCATTACAAATTGAAACTGGCAATGGACGTGGTAGTTTACCACCAGTGtttacattttgtatttatatGCCAATTTTTGCCCAGCGTCTGGATTGTGTGAGGGAGCAGTATCACGTCaggttatttttgtattttagcTGTAAAAATGAGTTCAATTAGATATTATTTTACCCGTTTTTATATATTTCTTTTGTCAATCCTTTTAGGTGGGTGAATGAATGGGTGTCTGTTCGTATTCTAGAATGCCGGCAATAGAAGATGAACCAGCGGAACACCGAAGTACTGTATCATAGATTTTATACAGAGCCAATACACAATCTACATGTCCAACTGTCAGCGTAATCATGGATCATTTGCTGTGTCCACGTAGTGCAAACTAATGGCCTGAACAACGCTATTTCTCTCAAGTAGTTACAAGAGCAACTTGGTGGCAGATTGGCCATTTGTGTTCAAGGTGCCAAATGAACATAATTGAGCAGATGCATTGACGTAAACTGCCAGGTACAGCTTTGCGTTAACGTGAAATGTAGTGCAGTGTCCTACTTTATGCAGGCATAACCCCCCCCCTGAAGAAATGTTCACATTGACTTCGCAGAAATAGCTGTGTTCATGCTGATGGGTGTTGTTGTAGGGGAAGTTCATCTCGGCATGTAGTAAGCAGGTAGGTGTTTAGGTTGATTTTGCATCAAAGGAACGTTCATAGCGCCTCTTGCTTGAGACTGCAAACGGTGTTAATGATTTAATCAGACTCATTCTTTTTCAAACCTCCCTAAGACACTGATTGGATTCCGTTGTTTTGACCAATTCAAGAGGGTTACGGGGAAGGTCACTTATTTGTTTTCTAATTTTCCTTTTAGTACACTGAGAAGCAAAGATCACATTTCCTTTTAAATAAACTTTGATAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771634 lncRNA downstream 57412 40053375 ~ 40053601 (-) True G1548270
TU1771621 lncRNA downstream 80510 40029984 ~ 40030503 (-) True LOC110496213
TU1771616 lncRNA downstream 85571 40025236 ~ 40025442 (-) True G1548260
TU1771613 lncRNA downstream 89015 40021788 ~ 40021998 (-) True G1548257
TU1770872 lncRNA downstream 186020 39924639 ~ 39924993 (-) True G1547609
TU1771691 lncRNA upstream 32289 40154838 ~ 40169209 (-) True G1548317
TU1771698 lncRNA upstream 48310 40170859 ~ 40182138 (-) True G1548323
TU1771700 lncRNA upstream 48940 40171489 ~ 40172837 (-) True G1548324
TU1771709 lncRNA upstream 84090 40206639 ~ 40207042 (-) True G1548331
TU1771755 lncRNA upstream 112571 40235120 ~ 40239085 (-) True G1548376
XM_021571989.2 mRNA downstream 17241 40080215 ~ 40093772 (-) False LOC110496218
XM_021571993.2 mRNA downstream 17241 40080215 ~ 40093772 (-) False LOC110496218
XM_036952775.1 mRNA downstream 17241 40080215 ~ 40093772 (-) False LOC110496218
XM_021571990.2 mRNA downstream 17241 40081589 ~ 40093772 (-) True LOC110496218
XM_036952774.1 mRNA downstream 17242 40080215 ~ 40093771 (-) False LOC110496218
NM_001124553.1 mRNA upstream 3016 40125565 ~ 40130195 (-) True tapbp.1
trnaa-ugc-138 mRNA upstream 64593 40187142 ~ 40187215 (-) True trnaa-ugc-138
XM_036952783.1 mRNA upstream 85915 40208464 ~ 40209202 (-) True LOC118941158
XM_036952782.1 mRNA upstream 87735 40210284 ~ 40213780 (-) True LOC110496227
XM_036952794.1 mRNA upstream 196496 40319045 ~ 40369171 (-) False LOC110496231
TU1770684 other downstream 422332 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 462999 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 464480 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 479915 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 1323212 38776284 ~ 38787801 (-) True G1546396
TU1771745 other upstream 263421 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 517626 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 783138 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1540887 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1545711 41668260 ~ 41671514 (-) True LOC110496277

Expression Profile