RNA id: XM_036952791.1


Basic Information

Item Value
RNA id XM_036952791.1
length 9821
RNA type mRNA
GC content 0.54
exon number 64
gene id LOC110496231
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40319045 ~ 40369178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAAAAGCGAGCATATGCCTGGAAAGAGCGCAACACAGTGCCACGGATACTAAGACAAGGATGGAAATTAGGAAATAGAGTGAAGGTGCCCATAATAAGAAGACAGTGACAGGTTTACATTCAGGATTATGCATGGTTCCCTTAGGCAATAATATTACCCCACATGCAATAGAAACATAGCCTAGTAAGGGGTGAATATTTATTATAAACGTTCCATTTATTGCGTGCTCTCTTCCTCTCGCAACTCTACATTTTTTCTCACACGTCTGCCGCGCGCGTAATTGCTCacaatctctccctcccttcttcccttgTGCCACTCagtcattcactctctctctctccgcacgcacacacgcgctcTCTCACTTTTCGTGGGAGAAagtaggaagggggagagagaacgagagagaaaggagagggagtgaATTcaggtctctctctgctctctccgcTGTGGGCACTCATATCCACTCCGCTGACTCAATGGGGCTTTAGCACTTGGAATATAAAATCAAATATTTATTGATCGTACCCCTTTTACTATTTAAATGTTGTACATAGCATAGGTAGATATAGGTAACTTATTAAATAAGCGTTAAGAAGAGTTCAAATACGTTGTTGTTTTTTGCCTCACAGAAGGTCCAGTCGAAATTCTCTTCCACTGACTTTCTGTGAGAGAGGATATCTAATTTGAACATATCCGATCATATAGTCCAGCGTCAAACAGTTACAAAACAATGGATATTCGAGATTGCCCTTTTCGGAAGAAGCGGAGACCATGGAGCGTGGACCTTTCCTCTTTTGCCTTGGTAACTCTGGTGCTCGCGCTGTGCCAACTACCCGTGGCTCGAGCAGATCCAGTGGATGTGTTGCGGATGCTGCAGCTGCCCTCTCTCCCCGAGGGGGTGCGGAAGGTTCCAGGCTTCTGCACCTCCCGGCGCGCCGGTACCGCTGACCACGCCTACCGCATCTCCAAGAAGGCCCAGATCTCTGCCCCTACCAATCAGCTCTTCTCAGGTCGTTTCCCGGAGAACTTCTCCATCATGGCTCTGGTCAAGGCCCATGCGGGCCTCCAGGCCTTCCTGCTGTCCATCTACAGTGAGCAGGGTGTCCAGCAGCTGGGGGTGGAGCTGGGACGCTCCCCTGTCTTCCTGTACGAGGACCAGACCGGCAAGCCCGCGCCCGAGGACTACCCCCTCTTCAGCGGCGTCAACCTGGCCGACGGCAAGTGGCACCGCATCGCTATCTCCGTGTCGAAGAAGAACGTCACTCTGCTCCTGGACTGTAAGAAGCGCATGACCAGGGCCCTGCCCCGCAGCAAAAGCCCCGTGGTGGACACCAAGGGCATCACCGTGTTCGGAGCACGCCTGCTGGATGAGGAGGTCTtccagGGTGATATCCAACAGCTGCTGATCGCATCCAACCCTCAGGCTGCTTATGACTTCTGTGAACACTACAGCCCCGACTGTGACTCCCCTCTACCCAAAACCCAGTCCCAGGACCCCAACACATACAAGGATGCCAATGGCAATGCTGACAAACGCAAACCTGTAGTAGTTAAGGCAGATAAACCTATAGTAGTTAAGGCTGCAAAACCTGTAGTAGTTAAGGCGGCAAAGCCTGTAGTAGTTAAGGCGGCAAAACCTGTAGAAGTTAAGGCTGCAAAACCTGTAGTAGTTAAGGCGGCAAAACCTGTAGAAGTTAAGGCTGCAAAACCTGTAGTAGTTAAGGCTGCAAAACCTGTAGTAGTTAAGGCTGCAAAACCTGTAGTAGTTAAGGCGGCAAAACCTGTAGTAGTTAAGGCTGCAAAACCTGTAGTAGTTAAGGCTGCAAAACCTGTAGTAGTTAAGGCTGCAAAACCTGTAGTAGTTAAGGCTGCAAAACCTGTAGTAGTTAAGGCGGCAAAACCTGCCCCATCCAAACCTGCGAAAGCAGAGATTGCCAAGCTTGAGGCCAAAGTTGCCACACCTGCCACAGCCAAACTAGCTAAAACCGAACCTGCTGCCGCCAAGCCCACGAAAGCCAAGCCTTCCCCGGCCAAACAAGCCAAAGCCAAACCAACTGCAATTGAAGTCCTCCTGGCCAAGATCAAACCCACTGCAGTCACACCAGTGGTCAAGCCTACACCTGCCACCAAAAATGGCAGTGGAAAAAAAGTCCATGGCAAGCCTGTAGTAGAGAAGAAACTAAATGGTAATTCCAAGGTCAGTGGCAATGCCAAACCTGTAgttgagaagaaagtaaaaggtGAGGCCAAAGTTAATGGCAACGGTAAAACTGCTGAGGATAAGAAAGTTAATGGTGATAGGAAAAGCGGCAGTTACAGAAAAGCTAATGGCAACGGTGTAGGAGCAGCCAAACCTGGAACCACTAAAGCCCCGACAGAAAGAAAAGTCACCAAAGTTCAAATAGAAAAAACTGTGGTCAGCAAAGTGAAACCAGGAAAACCAGAAACCGAAGTCAAAGTTAAAGTAGTAAAAACCGAGATCACTAAAGCCAAACCAACAGAGTCGGTCATCATCAAAGTTCCTCCCTTCACCAAACCTGCACCAAAGAAAGAGCTGCCAGAGAAAACCAAGGTGGCGCTTGATGTAAATAACATCAAATCGATGACCCAAAAAATGCCTCCCTTTGGCAAGACTGCACTCAGTGGCACCGTTGTCCCTGTGCCGGAAAAACCAAAGAAGAAACCGGGCAACGGTTATCAACAGGTGGAGGGAACGTTGGTGGCAGAGGAGGTAGAGTTGGCCAAGGCAGGGGGTGAGGTCGAGGCCTTTACTGAGGAGGAGTATGTGACCGGAGACCTGGGCATGAAGGAATATGATTATTCCTACAAGGACTACAACGAGCCCCTGCCTGAGGGAGAGACCGGGGGCAACATGGGCCCCGCTCTGTCCGCTGTGACAGACGAGGGAGGCgcctcagtgagcgCCGTAAAAGGCGAGAAGGGAGAGCCTGCTGTCCTTGAGCCTGGTATGTTGATTGAGGGACCTCCGGGACCAGAGGGACAGGCAgGTCTCCCGGGACCTAATGGCCCATCTGGCCCTCCTGGCTCTGTCGGTGATCCTGGCGAGAGGGGCCTCCCTGGAAAGGCTGGTATCGCTGGTGCCGATGGGGTGCCAGGCCCTCCTGGAACGTCCGTCATGCTGCCCTTCCGTTTCGGAAGCAGTGGAGGTGACAAGGGTCCTATGGTCTCAGCGCAGGAAGCCCAGGCTCAGGCCATTCTGTCTCAGGCCAGGCTGGCTCTGAAGGGACCACCCGGACCAATGGGCTACACTGGACGCACAGGACCCCTGGGTACCCCTGGAAGTGCTGGGCTGAAGGGTGAAGGTGGGGATCCTGGACCTCAGGGCCCCAGAGGACCACAGGGTTTGAGCGGACCTCCCGGCAAATCAGGAAGAAGGGGTCGTGCTGGAGCTGATGGAGCCAGGGGCATGCCAGGAGAGGGTGGGCCTAAGGGTGACCGCGGTTTCGATGGCCTGCCTGGATTGCCTGGGGACAAAGGACACCGGGGTGATACCGGAGGATTGGGACCCCAAGGAGGTCCtggagaggacggagagaggGGAGACGACGGAGACATCGGACCCAGAGGACTTCCAGGTGAACCAGGACCTCGTGGTTTGCTCGGTCCTAAAGGTCCGAACGGAATCTCCGGACCTCCTGGTGTGCGTGGAAACGACGGGCCCCACGGTCCTAAAGGAAACCTGgGTCCCCAAGGAGAGCCAGGCCCCCCAGGGCAGCAGGGTACCTCAGGAACACAGGGAATGCCAGGACCACAGGGAGCCCATGGGCCCCCAGGAGAAAAGGGCCCCACAGGGAAACCCGGTCTGCCAGGCATGTCCGGAGCCGACGGCCCCCCTGGTCACCCAGGAAAGGAGGGACCTGTTGGCACCAAAGGAAACCAGGGCCCCAACGGTCCTCAGGGAACTATTGGCTATCCTGGCCCTCGTGGCATTAAGGGAACTCAAGGTATCCGTGGACTGAAGGGTCACAAAGGAGAGAAGGGAGAAGATGGCTTCCCTGGAATCAAAGGAGACTTTGGTGTCAAGGGGGAGAGAGGAGAGGGTGGAGTGCCCGGCCCCAGGGGAGAGGACGGTCCCGAGGGGCCAAAGGGCCGCGTTGGCCCCCCTGGCGAGCTTGGACCCATCGGCCTGGTcggagagaagGGTAAACTTGGTGTCCCTGGACTTCCTGGCTATCCTGGAAGACTTGGACCTAAGGGCTCCCTCGGTTTCCCAGGATTCCCTGGGACCAACGGCGAGAAAGGAACAAGGGGTCTGATTGGAAAGCTGGGACCCAGAGGACAAAGAGGACCAACGGGCCCCAGAGGTCAGAGAGGACCGAGAGGATCTACTGGCAAACCAGGCGCCAAAGGTACATCAGGAAGTGACGGCCCATCTGGTCCACCAGGAGAGAGGGGACTGCCCGGACCTCAAGGAGCAAACGGTTTCCCGGGGCCAAAGGGACCTCCCGGACCACCAGGGAAGGATGGACTGCCCGGACACcctggacagagaggagaagtTGGATTCCAAGGGAAGACTGGGCCACCCGGACCTCCAGGTGTTGTTGGACCTCAAGGTCCCTCAGGAGAGACTGGACCCCTGGGCGAGCGCGGTCACCCCGGGCCTCCAGGACCACCAGGCGAGCAAGGACTCTCCGGACCCTCTGGCAAGGAGGGAACTAAGGGAGACCCTGGTCCCCAAGGCGGCCCCGGCAAAGATGGACCCCCAGGACTGAGAGGCTTCCCCGGAGAGAGAGGAATGCCTGGAACCCCGGGAGGCGGCGGACTGAAAGGAAGCGAAGGCCCAGCAGGACCTCCCGGAACAGCTGGATCCCCAGGCGAGAGAGGGCAGGGAGGCAGTGGAGGCCCCATCGGACCCCCAGGAAGACCTGGCCCCCAGGGGCCTCCAGGACCATCAGGAGAGAAGGGCGTGCCCGGGGAGAAAGGTCCGATCGGCCCGGCTGGTCGTGACGGTGTCCAGGGCCCAGTGGGTCTGCCAGGTGCTGCCGGATCCATCGGAGTTCCAGGAGAGGACGGAGACAAGGGTGAGGTTGGAGAGCACGGCCAGAAGGGAGCGAAGGGCGGCAAAGGAGAGCATGGTCCTCCCGGTCCACCAGGGCCAATGGGTCCACTCGGTCAACCCGGTGCTGCTGGAGCTGATGGAGAACTAGGAGCCAGAGGTCAGCAGGGGCCATTTGGAGCCAAGGGAGATGAAGGATCAAGAGGATTCCCAGGGGCCCCAGGTCCCATTGGACTGCAGGGATTGCCAGGCCCatcaggagagaagggagagacggGAGATGTCGGACCAATGGGTCCACCTGGCCCCCCAGGACCCCGTGGCCCTGCTGGTTCAAGCGGCGCTGACGGTCCTCAAGGTCCTCCTGGTGGTGTGGGTAACCCTGGAAACCTGGGAGATAAGGGAGAGCCTGGCGAAGCCGGACCACCTGGAATCGGAGGAGAGCCAGGAAAGAAAGGCCCACGTGGAGAACACGGAGACAAGGGAGAGGCGGGACAACCTGGTACCTCTGGCCCTGCTGGTGGAAGAGGAGGCCCTGGAGACGACGGACCCAAGGGAAACCCTGGCCCTGTTGGTTTCCCAGGCGACCCCGGGCCCCCTGGTGAACTCGGCCCCAGAGGTCAGGACGgagcaaagggagagagaggagaggacggtgaACAAGGACAAGCTGGATCTCCTGGACCCACTGGTGAGAACGGGCCTCCTGGAGGACCAGGAAAGAGGGGTCTTGCTGGAACGAGAGGACCAGAGGGAcgacagggagagaagggaacTAAGGGAGATCCAGGTGCCAACGGACCTCCAGGAAAGACAGGCCCCGTCGGACCTCAGGGTCAACCAGGAAAACCAGGAACTGAGGGTCTGAGAGGACTCCCTGGATCAGTGGGCGAGCAGGGTTCTCCGGGCCTTTCCGGCCAGAAGGGACCTCCCGGACCGCTGggACCGCCAGGTTTGCCAGGACTGCGCGGCGAGGGCGGTGACAAGGGAGAGAAGGGCCACTCGGGTCTGATTGGTCTGATTGGGCCCACcggagagcagggagagaagggagacaggggACTGCCAGGGCCACAGGGGACACACGGATCCAAGGGAGAGACTGGTGTTTCTGGAGGCACTGGGCCCATCGGTCCTGGTGGCCCTGCTGGTATGCCCGGTCCCGAAGGTGTGAAGGGAGCTAAGGGTGCTACAGGAGGAGCTGGTCCCAAGGGAGAGAAGGGTGTCTCAGGACCCCCCGGACCTCCAGGTCCTCCAGGCGAAGTCATCCAGCCAATGCCCATCCAAATCTCCAAGAAGTCCAAGCGCTCCATCGACGCCAGCCGGATGCTGTCTGAGACAGACGCAGAGTCGGCTGCAGCCGACGCCACCGGCACAGAGTTCCTGACAGGCAGTGAGGGCATGGAGGAGATCTTCGGCTCACTGAACTCGCTGAGACAGGAGATTGAGACCATGCGCTTCCCTCTGGGCACCAAGGACAGCCCCGCACGCACCTGCCAGGACCTCAAACTCAGCCAGCCAGAGCTCAAGGACGGAGAGTACTGGATCGACCCCAACCAGGGTTGCTCTCGCGACTCTCTCAAGGTGTTCTGCAACTTCACCGCTGGTGGGGAGACGTGTCTGTACCCCAGCAAGAGCGTGGACACGGTTAAGCTCAACTCTTGGACCACGGAGAAACCGGGCTCCTGGTACAGTGAGTTTGCAACTGGCAGCAAGctttcGTACGTGGACTCTAATGGCGAGCCGATCGGCGTGGTCCAGTTGGGCTTCCTGCGGTTGCTGAGTGTCCAGGCCCGCCAGAATTTCACCTATCACTGCCACCGCTCTGTGGCCTGGGCCGACCGCACTGCCAATAACGGCCACAAGAGGGCACTGCACTTCCAGGGCGCCAACGATGAGGACCTCAGCTACGAGACCAGCCCATACATCAAGGCCCTGGTCGACGGCTGCTCTtatCGTAAGGGCTTCGACAGGACAGTGGTGGAGGTGAACACGCCCCAGGTGGAGCAGCTTCCTCTGCGGGACCTCAAGATCACAGACTTTGGGGAGAGCAACCAGAAATTTGGCTTTGAAGTGGGACCTGTCTGTTTCATGGGCTAACACACCGTATAGAGAaatgagaaacacaaacacatatagaATATACACTTAcaatgatgcacacacacacacactctgtcatacacacacactctgtcacataCACACTCATGCACTTAACACAAACATTGACACAATTGCATAGACAtggcaatatacagtacatgcccAGTAATTTGTCAGGatatcaagcacacacacacacacatacacacacacacacatatatacacacacatatatacacacacatacacacacacacacacatatatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagttgtgaaACGGACATGCACTCACTCAAGTGTATGCCCAGGGGAAAACATCTCCCAAATAGAAATGGACGACAAGAGAAAAGTAGAACGCAAACATTCTCGCGAAGAGGAGACCAAAGATCGATTGCAAGAATGAGAGATGGCGTTCAGACCGTCAACAGAATAAAACAGTGTTCTTTTCCAACGAACAGCTGGGTCAAAGACCCGTCTCCTCCTTCCGTACACGCCAGAGCCCCCTGTCGCGGAccccccctctcactcctctctccttcccgctGTCTCTCTACCGAGTTGTCTCAGCCACTCTACCTCTCTGCTTCGCCCTCACCACACACTTGTACCTCTCCTGCATCCAAGCCCCACCCCATCCTACGCCTCATTTTCCGCCTCGCCGCATTAAGGGGACACCAACGAAGGAACGGGAGTTCCACGAAGGCCTGACGGTTCAGAGACGACCAGGAAAGTCTACTGTACGTCCATGTTGTCTAGCTAAgtgaattttctccatctccaccAGTGAAATTCTATACCAAAGAAACCAACTATACCAGCCTAACATGACAGTTACACTAAATCAGGTCAAATATAATGCAGGCGGATGAGTCGAAACTTTAAGGTGCTTTGTGGAGATGGAAGCAGATCTGTGACATCTCTAGCTTTACCGCGGCTCTAACCTTAAGGTGTGACTATGAGCAGCCCTTTACTCAATACTGTAGTAATATAGTCCTAACAGCAACGTACTGTCTCTGAGCTGCATGGCTGTTTATTTTGGGGCCAGTAATGTTGCATGCAATGGGACGGAAGGGTGTCTATGCCTTCTCCAAGGCCCAATGAATCAAAAGCCATGAACCTTGTAAATTGTACTGAACGTGACGTGTGGAACATTTATTTGTAATCAATGTTACAACTGTCACAGACAGTCCAGAACTGTAGTTCCTAGACAAGCGAATGGGCCAGAATGCCATCAAACCAGTCTAGTACTTACAGGTCTGGAATTTCATTGCTGTTTCATGTATAACACAGGGTTACATACCAGGATTTGTGACATTCCGTCTCTTTTCAAGCAGGGAAGGTATCAGGGTTAAATATGTATATGAGCTGAATAGATGACGACCAAACGTTCTCTCTTACAGCGGTGAATAAATGCTTGCTTTCAAAAAACTGTGGCACGGTGCTAATTATACCAAAGCGTTAATATATTCAGCGTGAATAATTCAAGTTTTTTCTCCATCACAGCCGCACGATGTCGTCACCAGTTCTCCTACTGGAAATGTGCAATCGAATCCATTTGTACAGACATAGTGATATTCTATTGTATTTATTGAAAACAAAACAGGGTGCTTCAAACAACGACAAAACCAAATATGACAGTCGAATGTGGTatttcattttgtatttatttcctGTAGTTCTCACTTGGCAGTCTTAAAACAATTAAATACATATTAAACTAACAATAAACCGAGTTATCTGTACACCCCCCCTTTGGTCTATGAATGTCAACAGttctggtgggggtgggggggagaacATATGTGGCCATATCTCATTGTAACCATTTAGCATTCATCGACTGTACTGTGCTGTTATGATTGCTTCTACTCTAATGATTAAATGGTGACTCTCCATTGCGGTTTGCCACTGCTTGGCTGAGCTGTGCTGCAGGAGTATGGCGAGGGCGACAGACACCAGGATTCTACGGTTGTGAGAATACAGCGGGCAGGGGACAGCTAGCGGGAGGGATGGAAGATTCTAGCAACCACGTGGACAAATATTACAAAGATTTTGTTTCGAAGTGATGTAATGTGGCTATGGGGTTGTATATCATTATGGGTATTTTGGTTTGTGTGTTTTGGTTCGTTTTCCTTTTGACATTGCAGAGAAGGGGGGGGATTGACAAACTAAAACCTGAGGTGATTCGCGAGAGAAAATTACATCGATAGTTTGTTGTTGTTAAAGACAAAcaaatatttcaacaaaatatgGTGCTGAAAAGACAAAAAGTATTATTTTATAATGTAAGtaattttaaatgttttgtttctGTAATATATCATCTTTTTAAAAATAGCTTCTTGACTCCCTTGTGTTTTTTTCCTCGTCCCCTCCGTTTCATCCTCTCTCAACTGGCTGGTGTTGCATGTTACCCAGAGCTACACTATAGCTAGTCATTATTTTATTTCTCTCTTCATTCTGCATACAGCAGCTCAGACAGCTGAATATAACCACATCATTCACAATCTCCAGTGAACTGACCACCAGAATCAGTCAGATCCCAACCTTATTTCCACTAGATCACctcaccagccccccccc

Function

GO: NA

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771799 lncRNA downstream 1824 40316985 ~ 40317221 (-) True G1548418
TU1771798 lncRNA downstream 2462 40316319 ~ 40316583 (-) True G1548417
TU1771794 lncRNA downstream 7032 40311798 ~ 40312013 (-) True G1548413
TU1771784 lncRNA downstream 40147 40278680 ~ 40278898 (-) True G1548403
TU1771770 lncRNA downstream 54392 40264454 ~ 40264653 (-) True G1548391
TU1771820 lncRNA upstream 868 40370046 ~ 40370378 (-) True G1548439
TU1771724 lncRNA upstream 44965 40414143 ~ 40415690 (-) True LOC101268904
TU1771892 lncRNA upstream 149395 40518573 ~ 40518783 (-) True G1548508
TU1771914 lncRNA upstream 173813 40542991 ~ 40543403 (-) True G1548520
TU1771915 lncRNA upstream 175489 40544667 ~ 40544898 (-) True G1548521
XM_036952782.1 mRNA downstream 105265 40210284 ~ 40213780 (-) True LOC110496227
XM_036952783.1 mRNA downstream 109843 40208464 ~ 40209202 (-) True LOC118941158
trnaa-ugc-138 mRNA downstream 131830 40187142 ~ 40187215 (-) True trnaa-ugc-138
NM_001124553.1 mRNA downstream 188850 40125565 ~ 40130195 (-) True tapbp.1
XR_005037471.1 mRNA downstream 196174 40111013 ~ 40122871 (-) True LOC110496222
XM_036952795.1 mRNA upstream 23442 40392620 ~ 40416072 (-) False LOC101268904
XM_036952796.1 mRNA upstream 23442 40392620 ~ 40416075 (-) False LOC101268904
XM_036952800.1 mRNA upstream 23442 40392620 ~ 40416076 (-) False LOC101268904
XM_036952802.1 mRNA upstream 23442 40392620 ~ 40416078 (-) False LOC101268904
XM_036952803.1 mRNA upstream 23442 40392620 ~ 40416078 (-) False LOC101268904
TU1770684 other downstream 630364 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 671031 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 672512 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 687947 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 1531244 38776284 ~ 38787801 (-) True G1546396
TU1771745 other upstream 16792 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 270997 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 536509 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1294258 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1299082 41668260 ~ 41671514 (-) True LOC110496277

Expression Profile