RNA id: XM_036952803.1


Basic Information

Item Value
RNA id XM_036952803.1
length 7234
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC101268904
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40392620 ~ 40416084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttggGTTCTGTGTATTTAGAGTTGGGCCAACTTTTAGAATTTGGGATATTGTTCTAATTCAAGACGTTCAGTGacataacattttttaaatattcccCATGTAATGTTAATGGGGAACATGGCTGCATGtggtagtgtcatgtaaatgcatcataatgctCATTACAGACATTCAGTTTTatagttttaaaaatatatatattccccatgtaatgttaattgggagctaacatggctgccataaaaTGTTGAAGTGGCATGTAAATGCATCGTAATGCAGAAACCTCTTCAAACGGTGCTGTTTTTGGTACGGTAGCTACTCCGTCAGCCACAGGCAGAAGGGCTGTACAGGGAAAGGGAGGGCTGACGGCGAGGCaaagtggggagagaggagaggaagaacttGGGGCCTGACCACCACATCTTTTCATGCGAACTCGGGGCCTGACCACCACATCTTTTCATGCGAAGAAACTGCACTGTCAAAAACGTTAGTAATTAGTCCTGTTTTTGGTCATCCGAAAACGACTCTGGCCCGGGCCTCAGTCCGCGGTCTTGAGTTAGATAGCGGAGTGTGATTGAAGCACGTCTATCCGTGTCCCAGCACGTCTTTTCCACCAAGGAGGTAATAATGGGTGACAGCAGAGGTTGAAATTTGACACAAAATATCCACAGAAAGTATTGTTTACTCAACTGTTTAGAGCGGCAGTACTGAAGTTGACATTTCTATCACCTGGCACATGCTCAAAACCATGTCAACACCTGCTGacaccagtacatcactgggacctatccaggacatctactcaaAATGGTGCCTGAGGAAGGCCTGCAGCGGTCATCACACCCCAAACACGAGCTGTTCCCTCCCCTACCGTCGGGCAGATggtatcggagcatgagATTCCCGCAGCCCAGACAGCTCCTCTGTGTCCTCCCCTCCCTCGGGCCAGCGCTCGCCACCCCTGACCCCCACAGCTGCTGCCATGACTTCTCTGCCTCCCGTCACTTCGGCCGTCAACAGCCCCATCAGCAGCATGGGCTCGCCCTTCTCTGTCATCAGCTCCTCCCTGGGGTCACCCTGCCTGCCCGGGACACCCTCGGTGGGCTACGGCCCCATCAGCAGCCCCCAGATCAACTCCACAGTGTCCATGTCGGGGCTGCACGCGGTCAGCAGCTCGGATGACGTGAAGCCTCCGTTCGGGCTGGGAGGCCACAGCCCAGGGGGCCCCATGCTCTCCCAAAAGCGCCTGTGTGCCATCTGTGGTGACCGCTCCTCCGgtAAGCACTACGGAGTGCACAGCTGCGAGGGCTGCAAGGGTTTCTTCAAGCGCACGGTGCGCAAGGACCTGAGCTACACCTGCCGGGACAACAAGGACTGCCTGGTGGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGCCTGGCCTGTGGCATGAAGAGGGAAGTGGTCCAAGATGAACGACAGAGATCCGTGCAGGAAGAGCGCCAGAGGAACAAGGAGCGGGAAAGCGAGGTGGAGTCGACCAGTGCCATCAACGAGGAGATGCCCGTGGAAAAGATCCTAGAGGCAGAGATGGCCGTGGAACAGAAGACCGAGCTGCATGCCGATGGGAGCTCCGGGGACAGCtcgCCCAACGACCCGGTCACCAACATCTGCCAGGCTGCAGACAAGCAGCTGTTTACCCTGGTGGAGTGGGCCAAGAGGGTCCCCCACTTCTCTGAGCTGGCCCTGGATGACCAGGTCATCCTGCTACGTGCCGgttggaACGAGCTGCTGATCGCTTCCTTCTCTCACCGCTCCATCAGTGTGAAGGACGGCATCCTATTGGCCACCGGCCTTCACGTGCACAGGAACAGCGCCCACAGTGCCGGCGTGGGAGCCATCTTCGACAGGGAGAGTGCGCACAATGCAGAGGTTGGAGCCATATTTGACAGAGTTCTCACGGAGCTGGTCAGTAAGATGAGAGACATGCAGATGGACAAGACAGAGCTCGGCTGCCTCCGAGCCATCATCCTCTTCAACCCAGATGCCAAGGGCCTGTCCAGCCCCAGTGAAGTGGAATTGCTGAGGGAGAAGGTGTACGCATCGCTGGAGTCCTATTGTAAACAGAGATACCCCGACCAGCAGGGCAGGTTCGCTAAGCTCCTCCTCCGGCTGCCAGCGCTGCGCTCCATTGGCCTGAAGTGCCTGGAGCACCTGTTTTTCTTCAAACTGATTGGCGACACCCCTATCGACACGTTCCTCATGGAGATGCTAGAGGCGCCCCACCAGCTCACCTAAGAACCAGGTTCTGCCCTGGTCCATTTTGCACCAGTGGTTCTAGTTCTGGCACCCTGGTTCTAGGGCTTCACCATGTCTGCTGGCTTTTATGTTCCGCTcacaccaaccccccccccccatatgctttcaaacacacacataatcaaatactttttcacagtaGGGGTTAAGACGCATTGAAATATCTCCTTTTTAACTGCATATACAAGTTTTAGCATGAGTTAGCCTTCAGCTTTGAGTGTCAACGCTTCTGCGAATCAAGGTAGACCTCTCAGCTTCTTGTGGGGTTCGTAGGTTATTCAGATACATTGCTGTGCGCATAGATATGACGAGTGGCTTACTCCGTCTTAGGCTTTACTCTTGGGTTTAACCCAAACACGTCATGATCAGGTGCGAAATATTTCAATCAACTGTCACCCAACTTCTATTGGTCGGGACACAGCCAATAGAGGCAGACACGCCCCTCTGTGTTCACCAATCCGAATGGGATTTGAATACTATGCTTTATTCATGCTTAAATGCTCTGAATTCATTCTGAAGTACTGTACTCTTAAAATGAGACCTTTTTAAGGCATTGAAATCCAAGGAGGGGGCACTTTGGTTGGCCCTTAAAGCTCACACCAGGCTTTCAAAGAGAGAAACTGACTTGTAAAGATGTGTTCTTTATTgcattttgctgtttgttctctTTAAGTCCAAACAAGGGCCATTGGGCACAGGAAGTGCAACCTTGTTCAAGAGCACTGCGTTCATTGGTGCTGTTGTAGATGTTTCTTTTGTTTGACACCCTCTACTTTGCTAATGGTCATTTTTGCACTCTGTGAAACATTACTGTGTAAGTAAACATTTGTTGCAGAAACCTATCTTGCCCGTCTTTAAGAAACTGGGGCAACCACAAAGAATCTCTCCAGCTCTCATCATATGTCTTCTGAAGAGCCACGGTGTTAATGGCCGTGCTTCGTTCTGTGAAATGGCCATCCGGTCTAAGAAAGCCTTGATATCATTCGATATCTTGTTCCAGTGGTCTACTGTACCCCTACAATTCCCCTTCTGAATCCTCCGTTTGTGTCATTCAAGTGCTTGCAGCCTCTTTCCGTTAACTTTTTAACAATATGTAAATACGATGACACATCTACTCCTTCACTAGAGCACGACTGGGCAATCCCAATATGTGCATACAGTAGGGAAAACACGGGGTTAGCAAGCATGTTAGCACACAACAAAAAGTATTCCCCGATAGCAATATGAACAGATATTGTACACTTTCAATatgtactgtaaaaaaaaaaatatatatatatatatatatatatatatatataatcgtaAAGGGTTTTACCCATAGACTGGATCTTAAGCTTGAAAAACCCACCTCGTTGTGACTGACTATTAGGTCTAGTTGTTGTGCTAGTAGTTTCGTCACTCTTGACGCGAATGGTATTCTATAGGGCTGCTGTGTCACGGGCAGGGCGATAGACCCCACGCCCTTAGCCTGCCCAGCCTGTGACAATACTTTGTGTTTTATTGTGGAGCTGATTGGTTGGCTTCAGCCGATGACCCTGCCAGCCATCTACCGTGACTCTATTGTGTGGTCTTACACAAACGTAAACAATAGGGGCCGATTCAGCTCCCTCATAACAGAACTAGCTGTCAACACATTACAAACTTTGAACTGAAATATTAAAAGAGCATCATTACACACAACGTGAGCAATATTGGCAGATGCATAACGATTGAGACCATATTGTGTGCATAGAAGGATTTAGATGTGTGGGTCGTTTTCTGAAGTATTTGGAGATTGGTATTATTTACCTTTCAGAACAGAAATTAGGATGTAGAATAGAGAATGCTGTATCGCGTACTGGACAGAATTCCAACTGTCCTAAAGTTGGGTGCTACACGACTCATGTGGTCTTACAATTATAGATGTGCTTGtttacaccagtggaggctggtggtaggcgttataggaggatgggctcattgtaatggctggaatggaatttatATTTGAGTCATTTTAGAAGACGCACTTAAACAGATCGACTtagaggagcaattagggttaagtgccttgctcaagggcacatcgacagattttttcacctagtcggctcagggattagaaccagcgacctttcggttactgtaaCCGCTAACCTGCCGCCTGTTCAATAGAATGCTGTCAAAcacgttgtttccatgtgtttggtaccattccattccctccattacaatgagcccgtcctcctatggCTCCTCCCACCAATGCAAACACAGTACACAAGCaaaacgccaagagtgtgcaagtaCACACCCTCCACCTTTTTTCCCCTCTTGAAACCGAGGTCTACTTATAATAGGATTCCCACTCGGCCGTACTCTTTTCAGCCGATCTCCTACATTGACTTGCAGTCAGGCCTTTCTGGCGGGAGAGGAACACCTCCCCCATGTAATGTGGATATGGAGGATGATACCTGTCTAACAGGATGTCCTACTCCAAGCCTGTGAACAGGCCGTGGGGGCACTGTAGACCATTTATATGCCCGTCGGGTTTATGTACGTCTATACATGTCAACATGAATCAGTCGCTGCAGAATAAAAATGAACGAGTAGAACTCGAGATCAGTCTTAAGGAATTTAGTCCCACAGGGTAGAGTCTACTCTCTCTGTGTATCCCCAGTGTGAACCACAATCTTGTCACGATGTTGGCAACAACCCCTCGTGTAATtccctctgttttttttttgttggagCTTCCTCATTTGAATGTGAACGCATTTCAATCTCCCATTTCTTAACAGTAGAAAAGCCTGACCTTGAGGGACCCCACTTCAAGCCAAAATGAGTCTTTGACTCcaacattctaacagtctaaTAAATTAATTTCATATATGATATTGGAAAAATAATATTTTGCTTGTGTTTTTGAAGGTCTTAGATAACAGAATGCCAAAAAAAGTATTGTTTCAAAGAACGAaatagcattttcattagtttgttactgtaggctattttgttttctcatgctcAAGTGTAGAGCTCGTGGAACAGAGGTAATTATTGGAAAAGTGATATTTAGAAATCAGTCTTACCTGCATGTGACTCTGTAGGAGGATTTGAAAAAGTCACTTGGTCGCTCCGGAAAAATATATATCCTCTTTAAAACTGCTTATAACACAAAATGCTAACATGCGTGTGTTAAATAGACGTATTTAGGAAAAGTCCGACTGAGGGAGGCATGACTTTAAAAATGACAGAGCTATTTCAATTTCATATTTAGTCAAAATGACTCACTTGCCTCTTCTAGTGCTGTAACAGTGCATTTTAAAGCGAATCCCTTGTTATGTTGTGTCTTGTCCTATAAAATTCAGTTTAGCTGTAAGCAGAGATACAGTATACGTATAACAGCCCTATAAGAATTCTACAGGTTCTATAAGCTAAGCATTTTCAGGTTGTTCAGGCAGACAGTTTATCAGAattatttaaacttttttttgAACTGCCTGTACACTATGTTTATGTGCCTGTGTTGATTATGTCACTATGTCCACTGTGTACAATGAGGTCTTGGTCTGGTTATACCAGCAAGCTCGGGTGTGCTGCAGCATGGAAAGAGGTTTACAACAACACAGAAAGATGCACAGAAGAGCAGGGCCGCAAGCGAAGTGGGGGCCTACATTTGCATACACGTTGCCCGGGCCCTTCTCTTCCCTTGCCAACCGAGTGCAGTGTCCCTTTGGTATTACTTGATGGCAGTGCTGCGGCGGTCTTCGCCCTTGGAGACAGACCGCCGGCGTGCAGCCCAAAGATGCGTGTCCCTCGTGACCGCGTGCACTCAAGGCAGACGCCTGGACCTTTTCATTACGTTCATTTATATTCAACTTACTTTTGAAAACACTTGCTTAAAAAAAACACACGCTTAAACGTTTGCATCCTGTGAAGCTGTCATGTGTTTGTATCTAGCGGGATGCAATACTTATTTAATAGACACCCTGGTGCAAAGGTCAACTCTATGATCAAAACACCCCATGCGATTGGTTGGTGCCACCCCTGTGATGACGTAACACTGCCGAACAGGTGTGAAGGCCAGCGTTGATGCTGTGCCACGCTGAGGTCCCGTGGATGACTGTTGAGTGTTCAGAGTGTTGTGCTTTGTCACTAAAGAACTCCCCTTTATAAGAAAGGTGCCACAGCAAGGGGGAGGGGCACTAGTCGGGGTGGTCCCTATGGTGATTTATACTGTGCATTGGTGCTTTTTTTTTGTGGCCAAGAGGGCAGAGTTACAAGCTAGGAACGTGCACTGATAATTTGACTATTTGGATCACGGTTTTGTCTTCCGTGTCCAGCGCAAACAGGAGTGTGTTTACGTAGAGAAATATGCATTGGACACTGCCAGCAAAACTTGGCTTAAGCTGAGGAAAAAATTGGAGCCAATGCATAGATCCCAAAGGTGCGCGCTGAAGTCACGCCTCTGGATAGTGTCCCATTACGCGGATGAACTGGAGGGGAGGGCCAGCTCAACATGCTCAGAGGAGGAGAATGCGTTCAAAGTGGGATAAGTGCTTAGGGTGATAGACTCACTTGATCAGATGATGTTTTGTTGATCAAGAAAAGCTGTTTTCGTTAGATCTGGAGATTTCCTGTCGTTGATTCCCGCCCAAATACACTGCTTCTCTGTTGTGCTTGACTCTTTCCTTTGACCGCGCGATTCATCTGTATTCAGGACTATTAAACACACGCAGGAACTGTTATATCACATGGGATTTTCAATTTCCTTTTTCTCATGTCTAGTTTTTTTGTCATTTTATCTCTGACTCCAACATACATGTGGAAATGATTGACTGTTTTGGGGAAGGAAAggcttttttttgtcatttaattTGGAATCTGTTTCTGTTGTATCATGTCCGAGTAAAGGTTTTAATACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771820 lncRNA downstream 22242 40370046 ~ 40370378 (-) True G1548439
TU1771799 lncRNA downstream 75399 40316985 ~ 40317221 (-) True G1548418
TU1771798 lncRNA downstream 76037 40316319 ~ 40316583 (-) True G1548417
TU1771794 lncRNA downstream 80607 40311798 ~ 40312013 (-) True G1548413
TU1771784 lncRNA downstream 113722 40278680 ~ 40278898 (-) True G1548403
TU1771892 lncRNA upstream 102495 40518573 ~ 40518783 (-) True G1548508
TU1771914 lncRNA upstream 126913 40542991 ~ 40543403 (-) True G1548520
TU1771915 lncRNA upstream 128589 40544667 ~ 40544898 (-) True G1548521
TU1771921 lncRNA upstream 138335 40554413 ~ 40554685 (-) True G1548525
TU1771936 lncRNA upstream 163512 40579590 ~ 40580803 (-) True G1548540
XM_036952789.1 mRNA downstream 23442 40319045 ~ 40369178 (-) False LOC110496231
XM_036952790.1 mRNA downstream 23442 40319045 ~ 40369178 (-) False LOC110496231
XM_036952791.1 mRNA downstream 23442 40319045 ~ 40369178 (-) True LOC110496231
XM_036952792.1 mRNA downstream 23447 40319045 ~ 40369173 (-) False LOC110496231
XM_036952793.1 mRNA downstream 23448 40319045 ~ 40369172 (-) False LOC110496231
XM_021572015.2 mRNA upstream 1497 40417575 ~ 40429473 (-) True LOC100136269
XR_005037475.1 mRNA upstream 29177 40445255 ~ 40446910 (-) False LOC110496236
XR_005037476.1 mRNA upstream 29177 40445255 ~ 40455548 (-) True LOC110496236
XM_021572030.2 mRNA upstream 53031 40469109 ~ 40471496 (-) False rps18
XM_021572029.1 mRNA upstream 53031 40469109 ~ 40471565 (-) True rps18
TU1771745 other downstream 737 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 703939 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 744606 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 746087 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 761522 39625775 ~ 39631098 (-) True LOC110496208
TU1771911 other upstream 224097 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 489609 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1247358 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1252182 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1899208 42315286 ~ 42316079 (-) True G1550177

Expression Profile