RNA id: TU1771724


Basic Information

Item Value
RNA id TU1771724
length 652
lncRNA type sense_over
GC content 0.49
exon number 3
gene id LOC101268904
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40392620 ~ 40416084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagaggagaggaagaacttGGGGCCTGACCACCACATCTTTTCATGCGAACTCGGGGCCTGACCACCACATCTTTTCATGCGAAGAAACTGCACTGTCAAAAACTCCTGTTTTTGGTCATCCGAAAACGACTCTGGCCCGGGCCTCAGTCCGCGGTCTTGAGTTAGATAGCGGAGTGTGATTGAAGCACGTCTATCCGTGTCCCAGCACGTCTTTTCCACCAAGGAGGTAATAATGGGTGACAGCAGAGAGCGGCAGTACTGAAGTTGACATTTCTATCACCTGGCACATGCTCAAAACCATGTCAACACCTGCTGacaccagtacatcactgggacctatccaggacatctactcaaAATGGTGCCTGAGGAAGGCCTGCAGCGGTCATCACACCCCAAACACGAGCTGTTCCCTCCCCTACCGTCGGGCAGATggtatcggagcatgaggtctgatatcAAAAGGCTCAGACAGTTTCCATCTACATCCATCATCAGActactgaacacttgaactggactgaccacatGCACTGACTCTCCGCACCTtggcgcacacacacatcacaactgctgctacccgACTCTTATTATGATTGCTAGATACTGTATTATaattatgctaaaatgtttattctactctactgagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771820 lncRNA downstream 43765 40370046 ~ 40370378 (-) True G1548439
TU1771799 lncRNA downstream 96922 40316985 ~ 40317221 (-) True G1548418
TU1771798 lncRNA downstream 97560 40316319 ~ 40316583 (-) True G1548417
TU1771794 lncRNA downstream 102130 40311798 ~ 40312013 (-) True G1548413
TU1771784 lncRNA downstream 135245 40278680 ~ 40278898 (-) True G1548403
TU1771892 lncRNA upstream 102883 40518573 ~ 40518783 (-) True G1548508
TU1771914 lncRNA upstream 127301 40542991 ~ 40543403 (-) True G1548520
TU1771915 lncRNA upstream 128977 40544667 ~ 40544898 (-) True G1548521
TU1771921 lncRNA upstream 138723 40554413 ~ 40554685 (-) True G1548525
TU1771936 lncRNA upstream 163900 40579590 ~ 40580803 (-) True G1548540
XM_036952789.1 mRNA downstream 44965 40319045 ~ 40369178 (-) False LOC110496231
XM_036952790.1 mRNA downstream 44965 40319045 ~ 40369178 (-) False LOC110496231
XM_036952791.1 mRNA downstream 44965 40319045 ~ 40369178 (-) True LOC110496231
XM_036952792.1 mRNA downstream 44970 40319045 ~ 40369173 (-) False LOC110496231
XM_036952793.1 mRNA downstream 44971 40319045 ~ 40369172 (-) False LOC110496231
XM_021572015.2 mRNA upstream 1885 40417575 ~ 40429473 (-) True LOC100136269
XR_005037475.1 mRNA upstream 29565 40445255 ~ 40446910 (-) False LOC110496236
XR_005037476.1 mRNA upstream 29565 40445255 ~ 40455548 (-) True LOC110496236
XM_021572030.2 mRNA upstream 53419 40469109 ~ 40471496 (-) False rps18
XM_021572029.1 mRNA upstream 53419 40469109 ~ 40471565 (-) True rps18
TU1771745 other downstream 22260 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 725462 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 766129 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 767610 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 783045 39625775 ~ 39631098 (-) True LOC110496208
TU1771911 other upstream 224485 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 489997 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1247746 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1252570 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1899596 42315286 ~ 42316079 (-) True G1550177

Expression Profile