RNA id: XM_021572015.2


Basic Information

Item Value
RNA id XM_021572015.2
length 4146
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC100136269
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40417575 ~ 40429473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAATCACGCGAGGTTTCTATTAATTTGACTAAATGCCACGTCTGAGAACGAATAGACACTTTTGAGATCTTCTGTTGGGAATCATTTATCTGATAAACCGTTATCACTGACCCGCAACATTGCAGACTGGTTATCCGTGCATAATTACAGCAGACAGGTGAGATGATGGCCCATGGACGTCTGCTAGCACTGTTCACAGGAGCGGTGCTGTTGCTAGCCGCCCAGCTAACTGTTGCTCACAGTCACTCTCATGACCATGGGCATGCACATTCGCATGGGGGTGGCGGTTGCCATGGTCATTCCCATGGCGGTCAGAAGCTGCACCAGGGGGCCAGCAAGTGGAGTGCTGAGGCCAACCTGCCCCCAGCAGAGGAGTCGCACCACGGTCACGCACATGACCACGGACATGACCACGGACATGCTCACGCACATGACCACGCCCATGGTCATGCTCACGGACACGACCACGCCCATGACCATGGTCATGCTCACGGACACGACCACGCCCATGACCATGGTCATGCTCATGAGCACAAGGAGGAGAGTGGACACGGGCACACCcaaggaggggagagggtgaagaggcaggtggaggaagagaagagggacaTAGTGGAGCTCTGGATGCAGGCCATCGGTGCCACTCTGCTGATCAGTGCTGCTCCCTTCCTCATCCTTTTCCTGATCCCGGTCCAGTCCAATACAGACCAGCACCAGAACCTCTTGAAGGTGCTGCTGAGCTTCGCCTCTGGTGGCCTGCTGGGAGACGCCTTTCTGCACCTCATCCCTCACGCCCTGGAGCCTCACTCTAACCATGGAGACGAGGGACAAGGCCACTCTGACAGTGAAGAATCACAGTATCATGGCCACTCACATGGTGCTGCCCATGGTCACATGATGTCAGTAGGGCTGTGGGTTCTCGGTGGAATCGTGGCCTTCCTGGTGGTGGAGAAATTTGTTCGCCTCCTGAAGGGTGGACACGGACACTCCCACTCTCAGGCTGCTCCTAAGGCAAAGGAGAGTGACGgggagaaaaagaagaagaatgagGGTGAGAAAGATTCAAAAGAAAACAAAGATGAGAAGACTCCAAAAGAAGTGGAGGAGAAAACTACAGATATCAAGGTGTCGGGCTACCTGAACCTGGCTGCTGACTTCACACACAATTTCACTGACGGGTTGGCCATCGGGGCATCGTTCCTGGTGGGCCCAGCAGTAGGCACAGTCACCACTCTCACCATCCTGCTGCACGAGGTGCCCCACGAGATTGGCGACTTTGCCATCCTGGTCCAGTCTGGCTGCACCAAGAAGAAGGCTATGTGTCTACAGCTGCTGACAGCCTTGGGGGCTCTTGCCGGCACAGCCTGCTCCCTATTGGCTGAGGGTGTGGGTGCGGCCGCCACAGCCTGGATCCTACCATTCACTGCGGGTGGCTTTGTGTACATTGCCACGGTGACGGTTCTGCCTGAGCTGCTGGTTGGCCGCTCCAGTCTGGGCCAATCAGTGATGGAGATCCTAGCGATGCTGGTTGGAATTTACATGATGGTGCTAATCGCAGAGTATGAGTGAGACAGCGAGTCATCAAAAAGTAAGGGCggtagaaggagggagggatttaGAGGAGGAGCAGAAACCGAATGTGAGAGATGGATTTATACGATTGGAGGGAAAGATACTGATGGAGTTTAAAGGAGAGGGTGAGAAGATAAGTGACAGACATGGCTTTCACAGGACTGGACTAGGTTCCAAAGGGGACTTGAATGGGGAGTAGCATTTTAACACAAACCATCTGCAGGATGATGAGCAATAAGATATGTACTCTACAAAGTCCTCATCGGCATGTCTAAATCAGATAGGTCATCAAACCGAGACTTAGGCAAGCTACGCAGATGACTTGGGAGTTGTAGTTCATCGTCCATTAATAATTGCAGAGTTTATTCCCTTTTGGTCATAAAAAGGCTAACCAAAACAGTGTCCGTTTAAGTTGCCGTGAACTATAGTTAAAATCAAGAATTGCAATCATACCAATATGTTTAATGCTTACGTTTGCCTTTAATTGTACTTGCAGAGATCACAGATTGAACACAATAGAACTAGACAGTAAAGTGGTTAGGGCATTTTCCTGGGTTTAAATTCAGGGTTTATTTGGATCAGAGTATGTTAGTCTACAACTGGAACATTCCAATGAAATGAAAAGGGCATAATATTATAACGTGTAGTCCATAAACCAGGTCCCCAAACAGCAGCCATCTTAGATACTTGACATATATGAGGCCAAGAGGCTCCTGAAATGTCATCAGCTTCCGGAATGTGACTTATTGGGAAACATGAATAAGCTGCTTTAGATGTCTACAGCACACGGCAGTTACTGACCAAGCCACTTGTTTGTAACTGTTTTCATAACTGTTGGATGCTTTCGAGTTGCATGAAAATCATGAGTTGTACCAGTATGTGACTATCTCTTAATTTCATTATTACTCAATGGGTAAGTGATGTAAGCTGTGCTTAGAGGATCTTTGGAGTATGATTAGCTTCATAGTGAATAAATTGCTTTAAATGTGCCCGTCACATGAATTACCTTCATAATGTGGAAGTACAGTAAATTCATGTATTTAGGGTGGACAGGCCATTTGGAAACTGAACCGATTATCCAGTGACAGGAATCTTCCACCCTAATTTATCTTAATGTGTCTGGAAGGAATGTTTGACCTACCTTTGAACAACTGAATGATGAATCCTCTTCTACTTTTGTTTAGTGTTAATAAGCCGCGGCAGCAGGTTTTGTTGAATTGTAACATTTATTCATTTTTATTCACGTGTActattctctttttttttttcttgaatGGGTGTCTGCTTTCCCTCCACTCTTGAATAATACAGTAGGCCTTATGTGTCATAAAGACAATCAATGCTGTAGCTGTAATGTGGTTAGAAAGAGCTCCTTCACCCTAAACCATTCTGTATGTACACGACTGCATCTTTGGGCTGATTCCAAACCAACCCCACGCTGCTATCCCCATTTACCTTGTTGACTTTTTTGTTATGTATCTGAGATGGTTTGTATTGTCAATATTGTATAGTAAGCTGCTTTACGTAGGCATTTGTAATAATTAGGTTGTTTCCATCCAATGTATTCCTTTACATTGCCAGTCTTATCAGATGCCTTAAGTTGTCAACATTGGCTTATAGTTGGGTGCAATGGCTTGATTTGGAATCAGAACTTTTAATCAGAGGGACCAAGTAAAAAGGATTAATGTTAAAGTGGTGGGTGGGAGATTTAGTAAGAGAGTATGGTGGAATTTGTGTTACTTTGTTTTCTTGGACTTTTCATTAAACAATTAAGATTCCCTTACAATGTTTACACTATATTTTACTGGGTCCCTGTTTCTCATTAGATAATGCAAGAGAACATGAAAAATACAAGCAATCCAATACTTGATTAGTTTATAATCCAACCTAGGCTAGATATTGGGGGGGAAATTAACAACCGATCACAAACACAAGATGCAGGCCAAGTGTGACCgtattattatatataatatacatacgCTAAATGTACAAAACAgtaggaacacattcctaatattgagttgcacacccgTTTGCACTCAGAACCACCTcaattctacaaggtgtcggaagCGGTCTACAGTGatcctggcccatgttgactccaatgattgCCAGAttcgtgtcaagttggctggatgtcctttgggtggtggaaaattcttgatacacatgggaaactgagTGTGAAAATCCCATCAGcggtgcagttcttgacactcaaaccggtgcacctagcatctatgtcatggaaagaggtgttcctaatgttttgtgcactgtgAATGTAACTGCTTTGCTTGAAATATCTTAGTAAAACTTCTAAACTTTTACGTTTACCACAAAAATTATGTTAAATTAAAGCAAGCCCGCATCTTTACTTGTAAAGTCATCCTCTAGTttgatcttgttcttgataccatgtcttatTTTGAGGTGCTTTGACTGTCACGCCTATGCTAATATTGTTcaaattcgctagctagctagccaacaactgtaacgatgtgtttgagacaagtgctcattgtgcaaatgtatgttttcaataaacattgtaGACGAAATATA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14713 SLC39A7, KE4, ZIP7; solute carrier family 39 (zinc transporter), member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771724 lncRNA downstream 1885 40414143 ~ 40415690 (-) True LOC101268904
TU1771820 lncRNA downstream 47197 40370046 ~ 40370378 (-) True G1548439
TU1771799 lncRNA downstream 100354 40316985 ~ 40317221 (-) True G1548418
TU1771798 lncRNA downstream 100992 40316319 ~ 40316583 (-) True G1548417
TU1771794 lncRNA downstream 105562 40311798 ~ 40312013 (-) True G1548413
TU1771892 lncRNA upstream 89100 40518573 ~ 40518783 (-) True G1548508
TU1771914 lncRNA upstream 113518 40542991 ~ 40543403 (-) True G1548520
TU1771915 lncRNA upstream 115194 40544667 ~ 40544898 (-) True G1548521
TU1771921 lncRNA upstream 124940 40554413 ~ 40554685 (-) True G1548525
TU1771936 lncRNA upstream 150117 40579590 ~ 40580803 (-) True G1548540
XM_036952801.1 mRNA downstream 1491 40392620 ~ 40416084 (-) False LOC101268904
XM_036952798.1 mRNA downstream 1493 40392620 ~ 40416082 (-) False LOC101268904
XM_036952799.1 mRNA downstream 1493 40392620 ~ 40416082 (-) False LOC101268904
XM_036952802.1 mRNA downstream 1497 40392620 ~ 40416078 (-) False LOC101268904
XM_036952803.1 mRNA downstream 1497 40392620 ~ 40416078 (-) False LOC101268904
XR_005037475.1 mRNA upstream 15782 40445255 ~ 40446910 (-) False LOC110496236
XR_005037476.1 mRNA upstream 15782 40445255 ~ 40455548 (-) True LOC110496236
XM_021572030.2 mRNA upstream 39636 40469109 ~ 40471496 (-) False rps18
XM_021572029.1 mRNA upstream 39636 40469109 ~ 40471565 (-) True rps18
NM_001246345.1 mRNA upstream 55888 40485361 ~ 40487640 (-) True LOC100653472
TU1771745 other downstream 25692 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 728894 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 769561 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 771042 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 786477 39625775 ~ 39631098 (-) True LOC110496208
TU1771911 other upstream 210702 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 476214 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1233963 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1238787 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1885813 42315286 ~ 42316079 (-) True G1550177

Expression Profile