RNA id: XM_036952805.1


Basic Information

Item Value
RNA id XM_036952805.1
length 2164
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110496235
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40460473 ~ 40464209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCAAGTTGCTTCCACACATCCGGCGAAAAAAAAAGAGAACGATGGCTACAGAGGGTTTCCAAACCTGTCGTCTTTGAGTAATTATTGTCATTCTGGATGAAAAATAGCGATAGTATCACCCCCTCCCCCAACATACATCGTGATGGAAAAGAATCCCGTCACACGGTGGTCATAGTGGCACGAGCTTAAAACTGTTTCGTTACAATCCGGTGTTcgtagcaagctagctagttgtGCTGCGTGGGCTTGCGTCACCGGGCAGCTGTCCGTCAAATTCCTTGGGAGGGGTCTATAAAACACAAAATGGCGACTCCAGTCAACATCCAAAACCCCAGTAAGACGTGGGAGCTGAGCTTGTATGAACTGCACAGGAGCCCACAGGAGGCGATCATGGACGGCACAGAGATAGCTGTGTCCCCCCGGAGCCTCCACAGTGAGCTGATGTGCCCCATCTGTCTGGACATGTTGAAGAACACAATGACCACCAAGGAGTGCCTGCACCGCTTCTGCTCCGACTGCATCGTCACTGCACTCCGATCAGGgaACAAGGAATGCCCCACGTGCCGAAAGAAGCTTGTGTCGAGACGCTCGCTCCGCCGCGACTCCAACTTTGACGCCCTCATCTCCAAGATCTACCCCAGCCGTGACGAGTACGAGGCCCACCAGGACCGGGTGCTGGAGAGACTCAACCGGCTGCACAACAAGCAGGCTCTCAGCTCCAGCATTGAGGAGGGGCTGCGCATGCAGGCTCTGCACAGAGCCCAGCGAGTGCGCAAACCGGCGCAGGAGAGCGACAACACCACCTTCAGCGGCGGCGAGGACAACGGGGATGCACGGTCACACCTCTCCCACGACTCTGCGCCCTCCCACGCGCCCCTCCCCCCGAGCCACACACCCTCTGAGGCCGGGCCCAGCCGGAACCCTAAGCGGCCTAGGGTGTCAGATGAGTCAGGCCCAGAGGTGGATGGGGGCAGCCCCACGGCCCCGCTCCGGCACCACAAAGAGGGCCCTGGCTCAGAGATAGAGCTGGTTTTCCGTCCGCACCCCCTGCTGGTCAACACACAGGACTACAGCCAGACCAGATATGTGAAGACCACAGCCAACGCCACAGTGGACCATCTGTCTAAGTACCTGGCTCTGCGTATCGCTCTGGAGGAGAGGCAAAGAGACAGCCAATCCGATGCAGCGatggagaaggggaaagagggagtggaggcGGGGGCTAAAGGAGAGAAATCAGCAGGAGGGGCCAGCCTGAAGAACGTCAGTGAGAAGCAATacaccatctacatcaccacatcAGGGGGCCAGTTCTCTACTCTGAACGGCTCCCTGACTTTAGAGCTGGTGAATGAGAAGTACTGGAAGGTCAGAAAGCCTCTGGAGCTTTACTATGCCCCCACCAAGGACCAACCTCTTCAACCATCACAGCCACCGCAGCAGAAGTCCCCACAGCCcaaagaggggtgaggaggacagGAGTCCTCCCTCTTCAGCTGTTATCACTCGCTGTCTCTGACAGATTTCTGTGTGTGGCGTGTAGCTGCTTCTAAGGTAGTCATTTGGAACATTCCATAGATTGAAGGTCTTCAACTTTGACCTCAGAATCTGAAGGTTTTCTGTTTTTATCCTCCGTAGCTTCTAATCAAACCTGAGTATGAAGTTGTTTTTGCAATTCCTACACATTTTTTTCCTTAATCGAATGGTTGACTTAAAATGCTGTCTGGACCGGTGTGCACACCTACGTAGTCCAGCCTTCCTTCAGACCACCAAGTGTTGCTTGACCTTGCATCAGGACTGCCAGATTTTGTTGATACATCATTTCAGATCAGTGTGAGAAttcatacactaccggtcaaaagtttttcaaacacctactcattcaagggtttttatttattttgactcttttctacattgtagaataatagtgaagagatcaaaactatgaaatgacatgtggaatcatgtagtaaccacaaaagtgataaacaaatcaaaatacagtacattttaTAGTTGAGATTCCTCCCctttttcaaacagtcttgaaggagttcctacatatgctgagcacttgttggctgcttttccttcactctgcggtccgactcatcccaaaccatctcaatttagttgaggtcgggtgattgtggaggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771110 lncRNA upstream 40077 40417407 ~ 40420396 (+) True G1547815
TU1771143 lncRNA upstream 44624 40414796 ~ 40415849 (+) True G1547840
TU1771111 lncRNA upstream 64264 40392626 ~ 40396209 (+) False G1547816
TU1770978 lncRNA upstream 137606 40322289 ~ 40322867 (+) True G1547697
TU1771075 lncRNA upstream 144097 40316169 ~ 40316376 (+) True LOC118941159
TU1771134 lncRNA downstream 4900 40469109 ~ 40471582 (+) False G1547834
TU1771135 lncRNA downstream 4900 40469109 ~ 40471582 (+) False G1547834
TU1771183 lncRNA downstream 56078 40520287 ~ 40520591 (+) True G1547880
TU1771191 lncRNA downstream 80266 40544475 ~ 40544828 (+) True G1547888
TU1771216 lncRNA downstream 98110 40562319 ~ 40562524 (+) True G1547910
XR_005037474.1 mRNA upstream 141639 40316223 ~ 40318834 (+) False LOC118941159
XM_036952787.1 mRNA upstream 150907 40297053 ~ 40309566 (+) False LOC110496233
XM_036952807.1 mRNA downstream 7939 40472148 ~ 40484340 (+) False vps52
XM_021572027.2 mRNA downstream 23745 40487954 ~ 40500744 (+) True LOC110496243
XM_036952808.1 mRNA downstream 61676 40525885 ~ 40542149 (+) False LOC110496240
XM_036952809.1 mRNA downstream 61677 40525886 ~ 40542149 (+) True LOC110496240
XM_036952806.1 mRNA downstream 98761 40562970 ~ 40601009 (+) False LOC110496237
TU1771113 other upstream 30953 40427108 ~ 40429520 (+) True G1547817
TU1771080 other upstream 133292 40326475 ~ 40327181 (+) True G1547788
TU1771032 other upstream 258015 40201909 ~ 40202458 (+) False G1547743
TU1771007 other upstream 353627 40106278 ~ 40106846 (+) True LOC110496221
TU1771006 other upstream 353697 40105995 ~ 40106776 (+) False LOC110496221
TU1771136 other downstream 6160 40470369 ~ 40471582 (+) True G1547834
TU1771210 other downstream 243809 40708018 ~ 40717744 (+) True G1547904
TU1771282 other downstream 273409 40737618 ~ 40738475 (+) True LOC110496251
TU1771519 other downstream 701345 41165554 ~ 41169102 (+) True G1548171
TU1772721 other downstream 1173113 41637322 ~ 41638401 (+) True G1549270

Expression Profile