RNA id: XR_005037481.1


Basic Information

Item Value
RNA id XR_005037481.1
length 1476
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118941163
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40501665 ~ 40503478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaccagcagagggagacagggtgaagagaaagaacaggaacaagacacaacatgacaatacatgacagttatgttgtgttgtgttgtgtagttgcTTTGATGGCATGCATCATTTTTATACATCTTctgttttgccccaccaagaaTCACATGCTAAAGTTGCCACTGCTTTGGCCTAAGAATCACGGTCggaaggcatatgaactaacaggttatagagcaaacaacgcaatccTCACCACATGTAGGTTGTAATAAGCCTTTTATTTATGGTTTGGCTTCCcaagtgattttacccacgcactgcAACTGTCCTTGAAAGTAATTCAATGAAATTGATGAATGACTTTTAACAAGTATCAAATCCAAATctactttatttgtcacatgcttcgttagcaacaggtgtagacggacagtgaaatgctttcttacgggcccttcccagcaatgtagagagagaaaatagagaaataatagaaaagtaataacacgtaataataaaagtTATAATAAGAGTTCTGGTGAAACATTTGTACGTTTTTTGTGTTTCCTAATGATTCTCCTCACCTCCAGTGTAACAGACACAGGTACAGTGAACATTTTGTTATGTGCATTGAGTACTACACGCACAGCACTTTCTTTCTATCCAAGACAAAATTAACAAAACATAAGAACAGGAAGTAGTAATTCTAGCTACTGGGAAAACCATAGTGTATCAGAATAATTATGAGCAATTTCTATTGATTGCAGATGCTACTTCATGAACACATATATGTGAACAATCATAGTTGCCTATAATCAGTGACAAAGTGTTTCTATCTTCATTGTTCGGGGATATTCAATACATTCTGTTAAAAACACACGTCAGCTTCCTTGAAGCAGGCAAATTGTATTCCCACTCTAAGCATATATCATGTTCGCTTTAGATAAAGAGGAATAGTGGATCACACAGGAAGCAGGACCTAAACTGACTCAGGAAGATATGAGTGACACACAGCCTTGCATGGCAGTTGTAGACAAAAATTGATATTCTCATACATACAGCCACTGTGGAAGTAGACTGCCTTCTCAGGTGATGGCATAGGCTTATGACAAGACAGGCTCTCAGAAAAAAAACCCGATCCAACACATTACCCCACATTTTGAGACTGAATAAATTAGCGTTCTGCTGGCAGAACCCTATTGCTGCCCTGTACAGTATCTAGAAAAGCCAAGCAGAGGTGGTTCTTCAAGAAAGATAGTGAAACATGCAAAAcaggaaaagggagagggaggacccACAGAACAGGTTTTCCTTTGATGAAGATGGAGCCCTGCGGAACCTCAATCTGCAGCCTGGGGACTCTGGAGAGAACCTGTGTAATGGGGAAACGGCAGCTAAAGTAACAGTGTTGACAGATCACCTCAACATCCAGAGTACCACTGCTGTTATGAAAACAGATGTTGTTGGGAGAGATAAGGACCTACAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771724 lncRNA downstream 85975 40414143 ~ 40415690 (-) True LOC101268904
TU1771820 lncRNA downstream 131287 40370046 ~ 40370378 (-) True G1548439
TU1771799 lncRNA downstream 184444 40316985 ~ 40317221 (-) True G1548418
TU1771798 lncRNA downstream 185082 40316319 ~ 40316583 (-) True G1548417
TU1771794 lncRNA downstream 189652 40311798 ~ 40312013 (-) True G1548413
TU1771892 lncRNA upstream 15095 40518573 ~ 40518783 (-) True G1548508
TU1771914 lncRNA upstream 39513 40542991 ~ 40543403 (-) True G1548520
TU1771915 lncRNA upstream 41189 40544667 ~ 40544898 (-) True G1548521
TU1771921 lncRNA upstream 50935 40554413 ~ 40554685 (-) True G1548525
TU1771936 lncRNA upstream 76112 40579590 ~ 40580803 (-) True G1548540
XR_005037480.1 mRNA downstream 255 40500738 ~ 40501410 (-) True LOC118941162
NM_001246345.1 mRNA downstream 14025 40485361 ~ 40487640 (-) True LOC100653472
XM_021572029.1 mRNA downstream 30100 40469109 ~ 40471565 (-) True rps18
XM_021572030.2 mRNA downstream 30169 40469109 ~ 40471496 (-) False rps18
XR_005037476.1 mRNA downstream 46117 40445255 ~ 40455548 (-) True LOC110496236
XR_002469532.2 mRNA upstream 41731 40545209 ~ 40553619 (-) True LOC110496249
XR_005037479.1 mRNA upstream 171991 40675469 ~ 40678071 (-) False LOC118941161
XR_005037478.1 mRNA upstream 171991 40675469 ~ 40678077 (-) True LOC118941161
XM_021572036.2 mRNA upstream 283349 40786827 ~ 40807771 (-) False LOC110496253
XM_021572037.2 mRNA upstream 283349 40786827 ~ 40807771 (-) True LOC110496253
TU1771745 other downstream 109782 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 812984 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 853651 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 855132 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 870567 39625775 ~ 39631098 (-) True LOC110496208
TU1771911 other upstream 136697 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 402209 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1159958 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1164782 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1811808 42315286 ~ 42316079 (-) True G1550177

Expression Profile