RNA id: XR_005037478.1


Basic Information

Item Value
RNA id XR_005037478.1
length 1517
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC118941161
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40675469 ~ 40678077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGATGAGTTGAGAATTAACATACCAGAAGGACTCTAGCTGCAGTTTAGGTGTCCATTGGTTACGACCCTGACGCTTCGAAGACACAGACTGCGTAATTTCATCAATGCTGCATAACATTTTGCGCAGCTACAGACGGTCACATGCGGTTGGACACATGGATGAGAGAATCATTTTCGCAGTGTCCTCAAAACCGTGCCTTTTTGACACAAATGCTGACAGCTACAGGGACTTAAACATAAAAATTGCTGCTTGGAGTCAAGTGTCCACGATAGTTGAATTACCAGGTCAATCTAGTAGTGAACTTGTGCTAGAtgtggctagttagctagctagctaactaacctaGCCAAATGAGGTGTGTGTGAAAGATAGATAGTAACATAAATAATGCTAGATACTACCCCTGATAACTTGGCCAAATAATCATGTTTGAAAGAGTGtgaatgtgagagagtgtgagtgtgtatgagagagtgtgagtgtgtatgtgagagagtgagtgtatATGTAAGATAAATAGTAATTGTGTTCGATACTACCCCTGATCATTTGGTCAGATAACCGTGTGTGTACAGTAGGTGACATGTCCATGATAGCTATCTAATAACTATAGTTAATCTAGGTAATGGTTTGGCTTATCATGTTCATGTCTATGTAGAAGAAGACTGtaggaggaagtggagaggacTCGGGGACaagtatcagagagagagagaagggcagagaaagagaagaagaggtctGGGTCAGCAGCTTCAGAGATGGAGTCAATTTAGCCGACCAGCTCacaggaaggacaggaagaggagaggagttgtcTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACATGTCAGTTCTGtttaaattcagtcaattcaTAAAGTCATTTGTTTCTAAAGTCTTAGGATAGCATTCATTATTAGTGTTCCATAGATTTCTGAATTGACGGAATTGAAACTCACACACCGGAGAATTCACAGATGCTCTTGTTGGTCTCTTACCAGACTAAaggtgaatatatttatttcatttaaaaccTCTTGAAAACCAGGGTGTTGAAACTTCACAAAAAGTTATGTTCCATCGACTGGTCCATGACGTCCAGGGGCCATTTGCTTGTTTAGCTGTGTTATGGCTACACATTATTTTCTTctttcagagacagagacacacacacctctcctccagtcctctctgtccctcagATCTCCAgtgccctgccctctctctctttatggccATGTCTGAAGTTCCCCTACTACGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGTTATTCTCTTACAGATTACAGGCTGGCTACATGTTATTTTTGGTATTTttacacgcacacatgcacacctctttcaatgttgttttatttttttgtacaaTTTTTACAACACACATGCCTGTCATGTTCTTTCCTGTACTTGAATACTTATTAAATTCTAATGTTTTCATAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771981 lncRNA downstream 22227 40651342 ~ 40653242 (-) True G1548581
TU1771900 lncRNA downstream 28930 40642185 ~ 40646539 (-) False G1548513
TU1771967 lncRNA downstream 54114 40621122 ~ 40621355 (-) True G1548571
TU1771964 lncRNA downstream 57432 40617201 ~ 40618037 (-) True G1548568
TU1771955 lncRNA downstream 65649 40609535 ~ 40609820 (-) True G1548559
TU1771898 lncRNA upstream 14362 40692439 ~ 40694732 (-) True G1548512
TU1771903 lncRNA upstream 18173 40696250 ~ 40697475 (-) True G1548513
TU1772017 lncRNA upstream 58687 40736764 ~ 40737064 (-) False G1548612
TU1772020 lncRNA upstream 58687 40736764 ~ 40738264 (-) False G1548612
TU1772015 lncRNA upstream 59143 40737220 ~ 40740840 (-) False G1548612
XR_002469532.2 mRNA downstream 121850 40545209 ~ 40553619 (-) True LOC110496249
XR_005037481.1 mRNA downstream 171991 40501665 ~ 40503478 (-) True LOC118941163
XR_005037480.1 mRNA downstream 174059 40500738 ~ 40501410 (-) True LOC118941162
NM_001246345.1 mRNA downstream 187829 40485361 ~ 40487640 (-) True LOC100653472
XM_021572029.1 mRNA downstream 203904 40469109 ~ 40471565 (-) True rps18
XM_021572036.2 mRNA upstream 108750 40786827 ~ 40807771 (-) False LOC110496253
XM_021572037.2 mRNA upstream 108750 40786827 ~ 40807771 (-) True LOC110496253
XM_036952831.1 mRNA upstream 136750 40814827 ~ 40901989 (-) False LOC110496254
XM_021572040.2 mRNA upstream 136750 40814827 ~ 40901990 (-) False LOC110496254
XM_021572039.2 mRNA upstream 136750 40814827 ~ 40901991 (-) False LOC110496254
TU1771745 other downstream 283586 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 986788 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 1027455 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 1028936 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 1044371 39625775 ~ 39631098 (-) True LOC110496208
TU1772024 other upstream 227610 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 985359 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 990183 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1637209 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 1681071 42359148 ~ 42359628 (-) True G1550202

Expression Profile