RNA id: XM_021572039.2


Basic Information

Item Value
RNA id XM_021572039.2
length 7384
RNA type mRNA
GC content 0.53
exon number 47
gene id LOC110496254
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40814827 ~ 40901992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGGGGAAAAAAAGACATACCTGAAAAAAAGCTCACGGACGAGGAGCATGTAGTCTACCCTGGGGGCGGTCAGAACAGAATTCACATTTCATAGCTTATCACCTCTTTTATATTGGCTGCCGCCGAAACACATTTTTCTGCCTCAGTCAAGATTAAACGAGGTGAAGGAATGAATCGCTCAAGGGATGGGTGAATGAATACCAGCACGGGATACACCCACCATAGCAAGTCTGAAACTGAAGGAGCTGAAGATAGTTTGCCAACAGCCCGCGAAGCAAGACACACAGGAAGGGTCCTTTGGGAGCAATATTACCTGTAAACATATGTTTTGAAAAGGTTTTCTGAGCTCCTCTCCTATACCAGTGTGAAGGATGCCGGCTACAGGACTGAAGACGTGGGTATGGaatcctctactctgtctggctcttatctctctctcacctgcacCAGCTCCAGCTCAGGGTCAAGTTGCCACTCCACGAAGACTTCGTTTCAAGGTCCTGAGCGCAACCCAGCTGcatgtgtcatggaaagagccgaAAGGAGACTTTGAAAGCTACAGATTTATTTATAGCACACTATCAGATGCAGAGGTGACTGAACTAGAGGTGACAAAGAAGGAAGCTAAAGTGATCATAGACTTTGACGCCAGACAGTTATACACAGTCAAGGTCACTGCTGTGAAAGGTGCTCAGGAGAGCAAGCCACTTCTAGGAACATTTGAGGCCCAACTTTCAGAGCCTGACGTTAAGAACGTACAGCCCCAGAATGTACGCCCCAAAAACCAGAAAGACACCAGTGTCACAGAGGAGAACAATGAGATATCTGAAGAGCAGTTCATGTGTAAGACCCCGGCCATAGCGGATATTGTGATCCTGGTGGACGGATCATGGAGTATCGGACGGATAAACTTCCGTCTGGTCCGCATGTTCCTGGAGAATCTGGTTAGCGCCTTCCATGTGGAGTTTGACAAGACACGGATAGGTCTGGCTCAGTATAGTGGTGATCCCAGGATTGAGTGGCACCTGAACACTTTCACCACCAAAGAAGCAGTCATCGACGCTGTGAAGAACCTTCCTTACAAAGGAGGGAACACACTGACGGGTCTTGCATTGACGTACATCCTTGAGAACAGTTACAAACCCGAGTCTGGATCCAGGGCCGGCGTTCCCAAAATTGGAATCCTGATCACAGATGGGAAGTCTCAAGACGATGTCCAACCCCCGGCGCGGAGTCTGAGAGAGGCGGGAATAGAGCTGTTTGCCATTGGTGTGAAGAACGCCGATGAGAAAGAGCTGAAGGCCATTGGCTCTCCTCCAGAGGAGACGCACGTCTACAACGTGGCTGACTTCAGCGTCATGAGCTCCATCGTGGAGGGTCTGACCAGGACCGTCTGCGACCGGGTCGAACAGCTTGACaaggccatcaaagGCGACACAGGCCCAGAAGTCACCATGGCCGCTCCCAGAGACCTGGTGACCTCGGAAGTGACGGCCAGGAGTTTCCGGGTGTCGTGGACCCACGCCCCTGGCACGGTGGAGAAGTACCGGGTGGTGTTCTACCCTGCCAGCGGCGGCCAGCCCGAGGAGAAGGTGGTGCAGGGCACAGTGGACACGGTGGTGCTCAACTAcctcctctccctgactgagtacCAGGTGGCCGTGTTCGCCATCTACGCCAGCTCAGCTAGCGAGGCCCTCCGAGGCAGCACTACCACATTGGCCCTACCCATGGTGAACAACCTGGAGCTGTTTGACATCACCCACAATAGCATGAGAGCCCGCTGGAGGGTCGCAGAGGGGGCTTCTGGCTACATGATCCTCTATGCTCCACTGACCGAGGGAGACGCCGCCGATGAGAAGGAgGTGAAAGTGGCTGAGACTGTGAACGAAGTGGAACTGGAGAACCTGACTCCAGACACAGAGTACACAGTGACCGTGTACGCCATGTACGGAGAGGAGGCCAGTGACCCTATGACCAGTCAGGAGACCACGCTACCCCTGACCCCGGCGCGGAACCTGCGCTTCTCCGACGTCGACCACAGCTCGGCCAGGCTCACCTGGGAGGCGACGTCCAAGAAGGCCAACGGCTATCGCATCATGTACGTCAAGACAAACGGAGTGCAGACCAATGAGATGGATGTGGGCCGCATCACCACCCTGTTGCTAAGGAACCTGACATCATTGACAGAGTACACGGTGGCCATCTTTGCTATCTATGACGAGGGCCAGGCAGAGCCCCTTACTGACAGCTTCACCACTAATACAGTCCCAGAGCCTCTGAACCTAAAGACCAGTGAAGTCTCCACAGAGAGCTTCAGGGTCTCCTGGGAACACTCAGCCCAAGACGTGGTCCTCTACAGACTCACCTGGACCCCAACCAGAGGAGGAGACACTAAAGAGATGCTAGTGAATGGTAACAGGAACAGCCACCTGCTGACTGGACTGAGGCCCATCACTGAGTACGAAGTCTCTCTGATTGCTGTCTTTAGAAACGAGGAGGAAAGCGACGCCGTGACCCTCACAGAGTCAACAGtggcaagaACAACTACTACCACAAAAGCTACTACAACCACAACTACCACACGAGCTACCACCACAGCAGttGTGCATCTGGGTGCGAGGAACCTCCTGCTTAGTGATCACACCACCTACAGCATGGAGGTGTCCTGGGAGCTGCAGGACCGCAATGTGCGTCAGTACCGCGTCGCCTATGTCACCGCCAGGGGCGATCGTGCCGAGGAGACGAAAATGGTCCCCGGTGGTCAGAACAGTCTGCTGCTGCAGCCACTGCTGTCTGACACGGAGTACAAGGTGACGGTCACCCCAGTCTACACTGACGGAGATGGCCCCGGTGTCAGCCGCATGGGACGCACCTTGCCACTGTCTGCTCCTAGGAACCTGAGAGTGTCGGAGGAATGGTACAACCGCTTCCGTATCACCTGGGACACTCCCCCATCCCCAACTATGGGCTACAGGGTCGTCTACAAACCCAtctctgCTCCGGGACCTGCTCTGGAGACCTTTGTGGGCGAGGACGTGAACACCATGCTGATCCTGAACCTGATGAGCGGTACAGAGTACGGCGTCAGGGTCATCGCCTCCTACACCACCGGCTCCAGCGAGGCCCTCACTGGCAAGGCCAGGACACTATACCTGGGAGTGACCAATCTGAACACCTACCAGGTGAGGATGAACAGCATGTGTGCCCAGTGGAGTTCCCACCGCCACGCCACTCTGTACCGTGTGGTCATCGAGTCGCTGCTCAATGGACATAAACAGGAGGCAAGGCTGGGAGGAGGAGCCACCCGGCACTGCTTCAATGACCTGATGGCTAACACGCAGTACAAAATCAGTGTGTACGCCCAACTCCAGGACACAGAGGGGCCTGCAGTCACCACCACAGAGAGAACCTTCCCTGTTCCCACCCCAGCACCCACCAGGCCGCCCACTACCACCCCTCCTCCCACCATACCCTCAACCAAGGAAGTTTGCAAGGCAGCCAAGGCAGACCTGGCGTTCCTAGTGGATGGCTCCTGGAGCATCGGGGATGAAAGCTTCCTGAAAATCATCCGCTTCCTGTACAGCACCACAGGAGCCCTTGACACCATTGGACCAGATGGCACTCAGGTGGCCATTGTCCAGTTTAGTGACGATGCTAGAACCGAGTTCAAACTCAACTCCTACGACAACAAGGAGAGGCTACTAGAGGCCATTAACCGCATCTCCTACAAGGGAGGGAACACCAAGACAGGGCTAGCCATCCGGCATGTGAAAGACACCATCTTCACGGTGGGGGGAGGGATCCGGAGGGGCATCCCCAAAGTAGTGGTGGTGTTGACTGACGGGCGCTCTCAGGACGATGTCAACAAGGTCTCCAAAGAGATGCAGATGGAAGGGTACATTGTCTTTGCCATTGGTTTTGCGGATGCGGACTACGGGGAGCTGGTGAGCATCGCCAGCAAGCCCAGCGAGAGACACGTTTTCTTTGTGGACGATTTAGATGCCTTCCAGAAAATTGAGGAAAAGCTGGTCACCTTTGTTTGTGAGGCTGCCACTGCCACTTGTCCTTCGGTGGCGATGAGTGGCAGTACCTTGCCAGGTTTCAGGATGATGGAGATGTTTGGCCTGGTGGAGGGTCTGTATGGACGTGTATCAGGAGTGTCCATGGAGCCTGGCACCTTCAACAGCTTCCCCTGCTTTCGGCTGCACAACAACTCCCTCCTCGCCCAGCCCACCAAGTTTATCCACCCTGAGGGCTTGCCCTCCGATTACACCATCACCATGCTGTTCCGCCTGCTGCCTGAAACCCCCAAAGAGCCCTTTGCATTGTGGGAGATCCTTAACAAGGACAACGAGCCCCTGGTGGGCGTCATCCTGGACAACGGTGGCAAGACCCTCACCTTCTTCAACCACGACTACAAAGGACAGTTTCAGACTGTGACCTTCGAGGGACCTGAAATCAAGAAGCTCTTCTACGGCAGTTTCCACAAGCTGCACCTGGCTATTAGCAAGACCAACGCCAAGGCTGTCATCGACTGTAAGCTGGTTGGGGAGAAGGCCATCAACGCGGCGGGCAACATCACCACAGATGGCCTGGAGGTGCTGGGACGAATGGTGCGCTCCCGGGGGAAGAAGGACAACTCTGCACCGTTTCAACTGCAGTCGTTTGACATTGTCTGCAGCACGTCCTGGGCCAGCCGAGACAAGTGCTGTGAGCTTCCTGGTCTGaggaaggaggaggactgTCCTGCCATGCCCCGGGCCTGCACCTGCACACAGGACAGCAAAGGCCCCCCCGGCCCCACTGGACCCCCTGGAGGTCCTGGGatcagaggagggagaggggaccgTGGAGAACCAGGAGCTgtgGGGCCGATAGGTCCAGTTGGGGACGCTGGCACTCCTGGGCTGCAGGGGCCTCCTGGCCCCCAGGGCCCCAGCGGCCGCACCATCATGGGCCCCccgGGtggtccaggagagagaggcgagaaggGTGCAGCTGGCGCTCCAGGAATACAGGGCATTCCTGGGTCTCCTGGGTCACCAGGTAGAGAGGGACAAACAGGAACAAGGGGACTGCCTGGTAAAGATGGACCCCAGGGGCGAACAGGTCCTCCAGGGACTATGGGCACTCCAGGAGCTCCCGGCTCACCAGGGTCAAGTGGACCTCAAGGGTCACTGGGAGACCAAGGACCTCCTGGTTCCGCTGGAAacaaaggagagaagggagaaagaGGTGACCTGCAATCCCAGGCATCGGTCCAAGCAATCGCCCGGCAGGTCTGTGAGCAGCTGATACAGAGTCACATGGCTCGCTACAGTTCCATCCTCAACCACATCCCCAGTGCACCCGTTTCGGTCCGCACCATTCCTGGACCCCCAGGAGAGCCCGGTCGGCAGGGCGGCCAAGGACCACAGGGAGAGCAGGGGCCTGCGGGCAGACCAGGGTTCCCTGGGTCCAACGGAGAGAATGGACAACCAGGAGCCAGAGGTTTGTCAGGAGAGAAGGGTGACAAGGGAAGCCCAGGTGTAGGAGTCCAGGGTCCCAGAGGCCCCGTAGGACCCCCAGGACCAACGGGTCAGGGGCGGACAGGTAGCCAGGGTCCGTCTGGTCGGCCGGGGAACCCTGGAACTCCTGGGCGGCCGGGTATCCCTGGACCAGTGGGGTCGGCTGGACCTCCTGGATACTGTGACCAGAACTCTTGCGTGGGCTACAACGTAGGAGAGGGTGGCAACGGTGGTGACCCATCTGACCACCGCAATGTTCCCTTAGTCCAATTGCCCCCCAACGTCTACCAGAACTATGACGAGGCGGGGGAGGAGGACCCCTATAGGTACGACGCGGGGGGCTACCCCTCCGAGTACTATCAGCCCAACTACCCGGCGCCCCGACCAGTCGAGCCTGAGGACCCAGCCCTGACCCAGGGCGACGAGGTGCTGAGGTCCCCCGGGATCCACCGCTCCTCCAGGAGCCtggctgaagaggaggaggaggaggagaagaagaaagagaaagaggggccgGAGGAGAGGAAAATGGTTGGTCCCATGAGAGAGAGCAGGCTAAGGAGAGCCTTGAGGAGGTCGGGGACACACGACTGAGGAGTTGGGACTGTTCAGTTAAAGGGAGAAATATCCAAAGGGGGTTCTAAGGACTATCATTAAGTGCCTGATGTCAATGTCAAAGGGACataagggagaggaagggtggaggaggttggaggagagagtgggagggaccatcttctcctcttctttctggAAGTGTTGTGGTTGGTGGTGTAGATATGGTATCTGTACTGTTGGTTGTAGCGTGGTCAGATTTTTGTGTGTGTTAATCGGTTACTTCAAGAGATACAATTGTATTGTTATTTTCTTTTCGTTTTCAGCCTACCACCTCTGTGGTTCATTCATCTAATTTCATGCAAATGATCAAATTCCTGGTCACGGTTTACTTCAAGTGCTTGTTTATGAGCTTAGTAAATACTGGAAGAACATAGGCCTGTAGTGTAGTATattatagtctagtgtatattatagtataatatagtatagtttagtagtaatatttttgttcaattgTAGCTTTTATTGCTAGGATATTACGCAAGAGTGAATAGCAAGTATTATTTCAACATTTTGAAAATATAATATTAACGATATACTACTTGGTGATATTTGTAGTGAATATAACTACCTATATTGATAACTATCCAACTAACATTATAAATAGACTCAATATGACCAGTTATTCTCCAGCTGTTCAAAACTTgactattattatttattttgatgAAATGTCCCATAATGTAAtatttgcatgtgtgtttgtttcaCATATAATTATTCCATATcaatttataatgctatttttaCCCACCCATGGGAAACAACATATCAACATAAATATATGCTTTCATATCTTGACAGGGTCATTCAAGCTACCAGCCATATAGCCCAACTAATACCCCCATTGCAGTGTTATAGTACAAACATTTTGCTCTTTGTATTTTTACGATACATGTATGTCTTTAAAGGGTGTTTGAGAAGGTGCTAAACATGTAATATAACAAGATTATGAGTTAAATATGTGAAAAatatatttctttttttaatGTATGTTTATTGTTATTGCAAGTGTCTCGGAATATGGTCTCCAGAACAGGAACGTTCAGCCTACAGTATTGTGATGAGTTGTTAGGCCTGTGGTCTATTCACCTTGCAGAGCTCCAGAGACTAACTATGTGGAACAGGCCACTGTAGTGTCTCTCATCAGAACACGTTTCAATCAAGGAagtaatttattttttacttggTATTGGTTTTTCAAACAATAAAATTGAAGTACAACCATTATTTGCGGTGGGTACTCTCAACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1772042 lncRNA downstream 28181 40783978 ~ 40786646 (-) True G1548631
TU1772038 lncRNA downstream 54257 40760345 ~ 40760570 (-) True G1548627
TU1772022 lncRNA downstream 71311 40742733 ~ 40743516 (-) True G1548613
TU1772016 lncRNA downstream 73837 40739875 ~ 40740990 (-) True G1548612
TU1772018 lncRNA downstream 76563 40737220 ~ 40738264 (-) False G1548612
TU1772025 lncRNA upstream 528 40902519 ~ 40908625 (-) False LOC118941164
TU1772154 lncRNA upstream 99124 41001115 ~ 41073864 (-) True G1548739
TU1772253 lncRNA upstream 229468 41131459 ~ 41131992 (-) True G1548824
TU1772277 lncRNA upstream 280075 41182066 ~ 41182287 (-) True G1548845
TU1772283 lncRNA upstream 301980 41203971 ~ 41205357 (-) True G1548848
XM_021572036.2 mRNA downstream 7056 40786827 ~ 40807771 (-) False LOC110496253
XM_021572037.2 mRNA downstream 7056 40786827 ~ 40807771 (-) True LOC110496253
XR_005037478.1 mRNA downstream 136750 40675469 ~ 40678077 (-) True LOC118941161
XR_005037479.1 mRNA downstream 136756 40675469 ~ 40678071 (-) False LOC118941161
XR_002469532.2 mRNA downstream 261208 40545209 ~ 40553619 (-) True LOC110496249
XM_036952832.1 mRNA upstream 1765 40903756 ~ 40908744 (-) False LOC118941164
XM_021572058.2 mRNA upstream 263548 41165539 ~ 41169132 (-) True ndufb9
XM_036952838.1 mRNA upstream 323694 41225685 ~ 41321792 (-) False LOC110496267
XM_036952839.1 mRNA upstream 323694 41225685 ~ 41321792 (-) False LOC110496267
XM_036952841.1 mRNA upstream 323694 41225685 ~ 41321792 (-) False LOC110496267
TU1771911 other downstream 129186 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 422944 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 1126146 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 1166813 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 1168294 39642855 ~ 39646533 (-) False LOC110496816
TU1772024 other upstream 3696 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 761445 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 766269 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1413295 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 1457157 42359148 ~ 42359628 (-) True G1550202

Expression Profile