RNA id: XM_036952832.1


Basic Information

Item Value
RNA id XM_036952832.1
length 3714
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC118941164
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40902519 ~ 40908744 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCTTATTGCCTACCCTGGGATAGCCTGGCAACAAGTcatccctcaacccctcccactccctcccggCCAGCCTAGACTGTTTACTCTCTCTGGGGGTTAACAGTTAACATTTATACCGGAGCACCACAGCTGACTACATCATCAGAGATTGTGGACAGCAACCTTCCCAAGTTACTTGGCACTTTGGCTGGTAAACCTTTGAAGTGAATTGTACAATGGGACCTCGGACAGCTGtcaCTCCATCTAAGGAAAGAAAGATGGTGCCCGGGGGGCAAGATAACAGTTTTAGTAGTGGCAACAGCGGGTATTGTAACAGAGGTCCCATGCTTAGCCCTACTTCACCTGTGCTGTCAAACCCCAAATCAGTGCTAAAGAGACATGTAAGTCCAGAGGAGCTTCGGAGACCAGGAGGTTCATACATAAAGAGGACGTTTACAATTGTGGGTGATGCGGTGGGCTGGGGCTTCGTGGTCAGGGGGAGTAGACCATGTCATATCCAGGCAGTGGACCCCAGTGGCCCTGCAGCAGCAGTAGGAGTGAAAGTGCGCCAGTTTGTGGTCTCTGTCAATGGTCTGGACGTCCTGTCTCTGGACTACAAGACGGTCAGCAACCTCATCCTCACTGGATCGCGGACCGTGGTCATGGAGGTTATGGAGGAGTCTGATTGCTGAGGATGAGGTTGTATTGTATTCGGTTACAGTCAACTTAAGGCCTCAGTAACCCATTGGCTCTTGGTGGTCGAAAGCTTAAGAGTAAGAATGTGGACTGTATTGGCCGAAATAAATCCATAGATACCTTACGACCTTGATATGGAGCCAAATGGACTTAGCTACATGATGGACTTGAGACGCGGGGTAAAAGCAACAGAAACCTGACGAGCCCCACTGTGAAGCCGTGTGTGCTTACATCATCAGTCTGAGACTCTGGCCAGTGTTCCGTGGTTAACATGGATACAGCTTGTGTTTTTTTTGCTCTCCCACAGCAGTTTAGACTTTTGACCTGTGCGCCTGCTGTTTGCTTTTCCACCCACTCCCTCGTTTGCTCCAATGGAGGGTTCCTTCCTAGAAAGACAAGTACTTAGGGTGTTGTTGATTAAGTGAGGTGGCACATATTGTCAACAACACTGCACTTTGTGACTTGGCAGAGGTGTTTTTGAGAGCAGTAGAATTTCTTTCGATGATTTAGCTTTGCTTGGAATATGTTTGGCATTGAATGCTAAAGTTTGGTAGCAGGAGTAACTTAAACCTTGTATTCATATTGGACTGAAAATAGCACAATACTGTCAAACTGCAGATCACATACTTTCTGGCAGCATAAAAAGGCTTGGATGTCATCTTGGTTTCTGATTCCACTGCAATATTTTTTGGAAACCCACAATACTGATAAAAGTTCAAATAATCAAACAGTAGTAGCCTATCAACATGTTAATCCTTTTTTAAAATTTCTTTTGAAACAACAAATCCGTGTGTTATGTTAATGCACATAGATAGGTTATAGCAGTGATATTGTGCATTTTGTCAAATGTGTCAAGGGTAATGCATGATCACATAGTCTAACACAAGGTATAAAGGACCCAAAGCACTAAAGGAGTTGTACTTTCATATAGCCATATAGCCCGACCCTAAACAGTTGTTATGGTCAACTGATCTTTAAAGGGTATTAGTGCAGACCAGGCCAGCAAAGAGTATCTGAATTTGTGTTAGCGTCTGATCAGTGTGAAAATATTTCAATTAGCCAATGaattaataaaaataaagtaATTTAATGGaaaatgttagcaaatgtgtATTTGAATCAATGTTTATGATATTAAAGCAATAACATGATTCATCACTTGCAAATAATCAATCTTATTATTGTTAAAAATCAGGGCTCACGTCAACGGAAGCAAATTATTTTAGCAACATCACCAGAAAATCAATATTATGGATAGAAATGTAACCGCTTCAATCGAATAGCAATAAAGTAAGAGCATTTATTGAACCCTGACGGGAACTTTAAACTGCAATAAAAGTTCAAATAACATTGAAGATCAAGATCAACAGGATCATATTGGCATTCCTAGATTAAGTGGTTATAATATCTGGTCAAGGAGTGTGCATTGTGCAATAAAATCTGTAGATGGCATGTGAACTATAACAACATTCAATCACGTAAGCAGACTATATGGCTCTGACCACCAGGTGGCAGTATGTACCATATATACAACTGATATTTCCCAATTGGATCTCATTGACTGAATATCCAAATCTCTTTTACAGGCATTTTACTGTAAATACCTTTCCAGTACTTTGAGAAGTTGTTTTGTTTGTCATGTTTGATTGATGTCACTTTTGCCACAATAATATTACAATAACAAACCACAAGCTGCATTATATTTTTCCTGCAATATTAGTAGGGTCGCTATCACTACAGATGACTAAAATATCCAGATTCGTGCCTGTTAGTGTAGGAAACTTATGTTAAGATAACCCCTCTGCTGCCCTCATCAGAGTTCAGGGGCCAAGGGTTTAAGTGCAGTAGCATGGAATGCTCTTAAGATGGGTCAGGGCTTGTGTCAAGGGCAGACATTGTGAGCTACTTCAAACTCCATCTAGTGATGAGCTCAGCATTATGAACGCACAAAGATATTCAAAAGCAAAAAGAGGAAGTGATAGTGTAACCATAtcctactgtaactacagtaacaactGTGAATTCTATAACTGCAGGAATGTTAACCCCATATAAGGGGCCTCCAATAAAAAAAGAGTTGAAGAGGGATTCCACAggtaattgatttaaaaaaagatgaTTCTTTATCACTTCTGTCATGACCATGACCTTGCTGTCATAGCGATGCATAAAACTCAGCGTACCTAACTACCCCTCTGTGCTTGTAGAAACACATTCGACATTGGGTCAACTGGGAAAGGTGTGTAGCCCAAGGGGCTCTTGTAGACCCTATAACTTCATGGGGCTAACCATGCTAACATACTGTATTCAGTCACAGTCTGCCTTTAGTCAATGATGTGTTAACTGCCCATCGATGAGTGGGAAGTAGTTTGCTGTGAGATGGTCTAATAAAAACAGCTCCAGTATCTAGAAGTTACTCAGATAAGTCAAAACTACTATCTTTTTCAACAGCAAGAGTAGAGTCTGTGTGTTTGGAACCATTTCAATAAAAAATACTATATTTATTGAGTGAAGCATTAAACTTCATTGGATATTCATTCAAAGAAAATGTAGGCTGCACCAGAGTGCCATTCCACTCATAACACCAAAGTGGCAAATTCGGGGGTAACCTGACAGGCCTCTTGAAGTAGATGCTAGGTTGCATTAAGGTTGCTGCAACATGATCAATGTGAGTGGTACTTTCTGTATCTTAACTTGGGTCtgtgctatccgggatccttgggacgtcactaccccattgaagttgacattttaaatggttacggtgagggttgaggttagggctcggtaagggttatggttaaggttagggtttagggtagggacgtccAAAAGATACCGGATTGCACTGACCGCTTAACTTGACACAGATAGGGGCTTATCATGAAAGGCATTAACACATTTAATGTGGTCAAGATAGGTAGTTAGTTCATTTTAACAAAGTCACTTTCCAGAAATTATTTTATTTCTTACCCAACCAATCAAATACATTACAGACTGATGGTACAtacaaacgtttggacacacctactcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1772069 lncRNA downstream 52933 40850617 ~ 40850823 (-) True G1548658
TU1772058 lncRNA downstream 72009 40831365 ~ 40831747 (-) True G1548647
TU1772042 lncRNA downstream 117110 40783978 ~ 40786646 (-) True G1548631
TU1772038 lncRNA downstream 143186 40760345 ~ 40760570 (-) True G1548627
TU1772022 lncRNA downstream 160240 40742733 ~ 40743516 (-) True G1548613
TU1772154 lncRNA upstream 92371 41001115 ~ 41073864 (-) True G1548739
TU1772253 lncRNA upstream 222715 41131459 ~ 41131992 (-) True G1548824
TU1772277 lncRNA upstream 273322 41182066 ~ 41182287 (-) True G1548845
TU1772283 lncRNA upstream 295227 41203971 ~ 41205357 (-) True G1548848
TU1772489 lncRNA upstream 441339 41350083 ~ 41350320 (-) True G1549043
XM_021572042.2 mRNA downstream 1764 40818257 ~ 40901992 (-) True LOC110496254
XM_021572039.2 mRNA downstream 1765 40814827 ~ 40901991 (-) False LOC110496254
XM_021572040.2 mRNA downstream 1766 40814827 ~ 40901990 (-) False LOC110496254
XM_036952831.1 mRNA downstream 1767 40814827 ~ 40901989 (-) False LOC110496254
XM_021572036.2 mRNA downstream 95985 40786827 ~ 40807771 (-) False LOC110496253
XM_021572058.2 mRNA upstream 256795 41165539 ~ 41169132 (-) True ndufb9
XM_036952838.1 mRNA upstream 316941 41225685 ~ 41321792 (-) False LOC110496267
XM_036952839.1 mRNA upstream 316941 41225685 ~ 41321792 (-) False LOC110496267
XM_036952841.1 mRNA upstream 316941 41225685 ~ 41321792 (-) False LOC110496267
XM_036952840.1 mRNA upstream 316941 41225685 ~ 41327540 (-) True LOC110496267
TU1771911 other downstream 218115 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 511873 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 1215075 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 1255742 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 1257223 39642855 ~ 39646533 (-) False LOC110496816
TU1773336 other upstream 754692 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 759516 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1406542 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 1450404 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 1986287 42895031 ~ 42897063 (-) False LOC118936491

Expression Profile