RNA id: XM_036952840.1


Basic Information

Item Value
RNA id XM_036952840.1
length 4918
RNA type mRNA
GC content 0.57
exon number 20
gene id LOC110496267
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41225685 ~ 41327540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaagccggtgacgtcgaccgacgaacgccgcccgaacaaggagaggaaccaacttcggcagaagtcgtgacagccgTATACATGCAAGAAGAAGGAAGTGTGTGTCATTGTGCATGTACTCAGCCAGTTGGAAGGAAGAATTCAGCCCACACCACCTCCATCTCGGAACCATTCAGAATCTTGTTCTGATTTGGATTTCTACTCAATCTCCTGGTTTGGATGTTCACTCTGTACCGGTTTGGCTCATCGAATCCCACCGCCTTTGTTGGATGATTCAGAAGCTGAGGACTTGGCTGAGGACCACTCTGCGGGGGtccacccccacctccctctcttctttctgaACCATTGTTTCTTCTACTTCCTGTGAACTTCGACGACAGTGACTGATTGCACGCTGCATCTGCCAGTCTCCGCAGGTTCAAGACTACAGGGCTCCCTTGGATCGGAGCCCCACACCATGACTTGCTGAAGCCGTCTTTGCTGCTACCCAACCCCCTTCTCCTCATTCAAGATGGTCCCTCCGAAACGGATGAGGAGGCGTCTCCTGCTGGCAGCCCTCGCACTCACTTCCTGTCTACTGTCCGCCATGGCCACGCCCTTCCCCAAGGACCTGGAGCCAATCAACGTTGTCGGATGGGAGCACTCCTACCTATGCCCAGGGTTCCAGGGGCTGGTGTCGGACAATGACACAGCCAGACTAGGCCTGGACTTCCAGAGGATGCTGAGGATCAATCACATACTCTACATTGCTGCCAGGGACCATGTCTTTGCAGTTAACCTGACCACAGCTGGTGACGACTTCGTCCCCCAGCTGAAGCTCACATGGAGGTCCAAGGATGTGGCCAAGTGTACCGTGAGGGGTAGAAACAGTGATGAGTGCTACAACTATGTCAAAGTGCTGGTACCGCGGAACGATGAGACCCTGTTTGCTTGCGGCACCAATGCCTTCAACCCCACCTGCCGCAACtacaagATGACCACCCTGGAGCAGGTTGGCGAAGAGGTGTTGGGTCAGGCGCGCTGTCCCTTCGAGTCGGGCCAATCCAACCTTGGCCTCTTTGCTGGTGGTGATTTCTACTCTGCCACCATGACCGACTTCCTGGCCAGCGACGCTGTCATCTACCGTAGTCTTGGCGACGACAGCCCCGTCCTGCGGACCGTCAAGTACGACTCCAAGTGGCTCCGAGAGCCCCATTTCCACCATGCGATCGAGTATGGGAATTATGTCTACTTCTTCCTCAGTGAGATTGCAGTGGAGTACACCACCCTGGGCAAGGTGGTGTTCTCTCGTGTGGCGCGGGTGTGTAAGAACGACAACGGCGGCTCTCCTCGGGTGCTGGAGCGCTACTGGACCTCCTTCCTGAAGGCGCGGCTCAACTGCTCGGTGCCCGGCGACTCCTTCTTCTACTTCGACGTGCTGCAGTCACTCACCAACGTGCTGCAGATCAACCAGCGCCCCGCAGTGGTGGGAGTGTTCACTACGCAAGCTAACAGTATCCCTGGCTCAGCAGTGTGTGCCTTCTACATGGACGACATAGAGAAGGCCTTCAATGGGAAGTTTAAGGAGCAGAAGACCAGTGACTCAGCCTGGACCCCGGTACCGGAGGAACAGGTGCCTAAGCCCAGGCCTGGTTCCTGTGCCGGGGATGGCCCGGCCTCGGCCTACAAGTCATCCATCAACTTCCCCGACGACACGCTGACATTCATCAAGTCTTACCCGCTGATGGACGAGGCGGTGCCCTCCGTCAACGACCGGCCCTGCTTCACCCGCACCACCAGCAGGTACAAGCTGACTCAGATTGCGGTGGACACCTCTGCCGGGCCGTCTAAGGACCGCACTGTAGTCTTTCTGGGCTCTGAGGATGGCAGGGTCCTGAAGGTGTTGTCCAGCACTCATCCTAACGCCTCCTTTGGCTCCCAACTCTTGGAGGACATTGATGTCTATAACCCCTCTAAGTGCAACGTTCAGgggcaggaggacaggaggattCTGGGAATGGAGCTGGATAAGGAGCATCATGCCTTGTTCGTGGCCTTCACCAGCTGTGTCATCAGAGTACCACTCAGCCGCTGCACCGAGCACGGCGCCTGCAAAAAGAGTTGTCTGTCGTCCCGCGACCCGTACTGCATCTGGCTCCGGACTGGGAGCTGTGCCAACATGGCGCCAGGGTTCAAggctGGCTTTGACCAGGACATCGAGGGAGACCACTCACTGTACCCTGAAAACTGCCACGCAGATGTGCTGGCGACCACACGAAACCAGAACTCCGCGGCAGACTCGGCCTACGGTGTCCGAAGGCTCCCTGACATGGAGAAGTCCAGCCCCAGCGTCCACTACACCCTCCTGATCGCCTGCGTTCTGGTGGCCTTCTTCCTCGGCGCCATCCTCTCCGGCTTCCTGGTGTCATGCTACTGCAGTCACAACGCCCGCCGTGCCCACCGGCTTGGCAAGGACCCCGAGGCGTCCATCCACCCCGCCCTCTCGTTGCGCAGCCTGGCCAAGCTAAACGGCCTGCTGGACGGCCAGCCCAAAGAGGAGAAGCTGGACGTGTCCACGCCCAAGATGTACAGCTCCTTCATTCCCAGTGGGAAGGAGCACACTCCAGAGAGGCACGGGATGTCCCTGGGAGACCCGGACCTTAACCTCTCCCAAGGGGAGAACCTCTCGGGCCTGCCCACCCCAGACTCCACCCCGGAGCTGCCCATCAAGAACATGAAGGCCTTCCGGAACCAGTGGGAGAGAAACCAGAACTGCAACAACGCCAAGGAGTCCAAGGCATCCCCTGGCACTGGCTTCAGCCTGGGTTCGTCAAGGTCCGTCACCCAGCAGGTGTTCCCCTTCTCTCACAGCCTGACCAACGGCCAAGCCCTGGGGCACCTGCCTGAGGAGAGGAAGATCCCCAACGATGAGCGTGCGCAGGGGGCTTCGGCCTCCCACTCCTGCTGCCCGCAGACGGTGGTGGACGTGGCGGCCCTGGACGAGCTCCTCAAGCACATCTACGAGGTCAGCGCCTCGGGCAGCCGCAGCATCACTGTGCTGACCTCACCGTGTGCCCCCCTACCGGGTAGCTCCAGTTCCAGCCATAACCACAGCAGCTTCAGATCCCAGCCCCAGATCCCTGAGACGGAGTCAGCCACGTACTACAGCTCCTCCACCCTGCCCAGGGACAGTCTGACCCGCCGCCTGGACGTGCCCCCGGACACCGCCGCCTCCTCGGCCGGCGCCACCCCACTGCAGCAGCAGTCCATCCCCGAGCGAAGCGCAGTGACTCGTCACCACTCCCAGAGGCACTTAATGATCAAGATGGGCAACGGAGGGGCCGTCCCGCGCCAACACAGCTTCAGACAGGACGGGGGTGGGCCACCTCCCCACCAACTGCTCACCCGGATGAACTCGTcaggtggtggtgggggaggggTCGGCTGTGAGGTCCACCAGCCGCTCATCCCCAGTGCCTGCCTGACACGGCAGCACAGCTACAGCGAACCACCCCACCTTCACCGCGCAGCCATCGTACGCCGCACGGCCTCCCTCAAGCCCCAAGTGCCCCCCAAGCCCCTCTTCCTGCCTGCCACTTCGCCCGTAAATGAGCAAGGCAAGTACAACTACTGAGCGCTAAGGAGTCGGACCTAAGAGGCTCCGAAACGACAGGCGATGTAACCGCGCTCCTCTGAGTTAGGGAAAGTGGAGCTCAAAGGGGGCAACTACTGGGACTGACACACCTTTTGGCGAGATGCCCGAGAATAGCCTCCACACCTGATGAATGTCTTTGTACCATATTGGTATTATTGCAATGCTCCTTGATCACAGAAGGGTGATGAATTCACAGAATATAGAAAATGTGGTGGTATtattttgagggggggggggggggggggggggcggttctATATCCTTCAGTGAGGCCAAAGAATACATTAACAGGAGCCCCAGAACTCAATGTAAAGGACAGATCGCAAGTCGACCACCGACGCTATGGACAATGCCTGTTCTAGCTTGGACCCAAGCCCTCAACCTAAGAGAGCACCTCACGACACGAACGAACACCCTGCCTGtaatatgtgtatactgtatgtgtgtgtatacaggcATATGCACTGCACGTGAAGATACACACATGGCGTCGCCAGGAAGCAGCTACACGAACTGTGGTGAGACTCAACTCCTAGCCGTTTCTTAACCCTCTACGACATGGAGGCCCCACTCAGTACACACGTTCGGTATTACATCCCTCGGCGCGTGGGATTTAGCAATAACTTACCGTTGTGCAGCTAAGTGTCAACTGGACCCCTTGAGGTAAGGGTAGGTACTTTACTTCATACAGCATACCTTGTGAAATTACTCCTTTGATAATGCTTCAAGTGATTCATTCTGTGTTAATGGAATGATGCTACAGAACGAGACATGAGCGTCAGTATCGACCCAACATGCATCACAGATTTGCCATTATGTTTGTCACTGGTGGGGGGGGTTTCATTGTCATGATACCTAATacaatgagaggggggggggctctgCTGCACCGTGACAGGTGGCTGCCTCGGGGCCTGATGAGTTAGGAGAATCATTGACCTGGTAGTGCTATGATAACTCCAGAGGAATTGAATTTGCCCCCAATATGACTGTCGTTGAAGAAGAGTATAGGGGCGCAGTGCATTGCAACCTCAAAAACGAGTTTGTTTCATCCTTAACACTTGGTGAGAATTGGTTCCACGGTGAGGCGTAATCATTCAGGCTATTCAAGTGTCTTAAAGCAGGGTCCCGAGAAATCACTCACGGGCACATAGCGCCCCCTTATGGACAAGCCCTTAATAACTGTAATAGTCAGTACTTATGTTTACCATATTGCTATTAACATTGTGGATATTGGTGTAAATAAAGGCAACTGTGGAAGAATACTAGCCAAACTTTGA

Function

GO: NA

KEGG:

id description
K06842 SEMA6; semaphorin 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1772283 lncRNA downstream 20328 41203971 ~ 41205357 (-) True G1548848
TU1772277 lncRNA downstream 43398 41182066 ~ 41182287 (-) True G1548845
TU1772253 lncRNA downstream 93693 41131459 ~ 41131992 (-) True G1548824
TU1772154 lncRNA downstream 151821 41001115 ~ 41073864 (-) True G1548739
TU1772025 lncRNA downstream 317060 40902519 ~ 40908625 (-) False LOC118941164
TU1772489 lncRNA upstream 22543 41350083 ~ 41350320 (-) True G1549043
TU1772494 lncRNA upstream 28932 41356472 ~ 41356756 (-) True G1549048
TU1772501 lncRNA upstream 36584 41364124 ~ 41364360 (-) True G1549055
TU1772523 lncRNA upstream 52954 41380494 ~ 41380749 (-) True G1549077
TU1772542 lncRNA upstream 66270 41393810 ~ 41394099 (-) True G1549096
XM_021572058.2 mRNA downstream 56553 41165539 ~ 41169132 (-) True ndufb9
XM_036952832.1 mRNA downstream 316941 40903756 ~ 40908744 (-) False LOC118941164
XM_021572042.2 mRNA downstream 323693 40818257 ~ 40901992 (-) True LOC110496254
XM_021572039.2 mRNA downstream 323694 40814827 ~ 40901991 (-) False LOC110496254
XM_021572040.2 mRNA downstream 323695 40814827 ~ 40901990 (-) False LOC110496254
XR_005037330.1 mRNA upstream 203203 41530743 ~ 41531326 (-) True LOC110496269
XR_002469624.2 mRNA upstream 204791 41532331 ~ 41533462 (-) True LOC110496931
XR_005037483.1 mRNA upstream 310714 41638254 ~ 41645613 (-) False LOC110496274
XM_036952844.1 mRNA upstream 323037 41650577 ~ 41661142 (-) False LOC110496275
XM_021572074.2 mRNA upstream 323037 41650577 ~ 41662848 (-) False LOC110496275
TU1772024 other downstream 317060 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 540044 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 833802 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 1537004 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 1577671 39642855 ~ 39648014 (-) False LOC110496816
TU1773336 other upstream 335896 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 340720 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 987746 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 1031608 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 1567491 42895031 ~ 42897063 (-) False LOC118936491

Expression Profile