RNA id: XM_036952844.1


Basic Information

Item Value
RNA id XM_036952844.1
length 4262
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110496275
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41650577 ~ 41662876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcatatgtgatgagtcaaagttATGTCGCTGGTGGATTTGGGGAAGCGGCTCCTTGAGGCTGCACGGAAAGGCCAGGATGATGAAGTCAGGACACTCATGGCCAATGGGGCTCCCTTCACCACAGACTGGCTGGGCACATCTCCGTTGCACCTGGCCGCCCAACACGGGCACTATTCCACTGCCGAGGTGCTGCTCAGGGCAGGCGTCAGCAGGGATGCCCGAACCAAAGTGGACAGGACCCCTCTGCACATGGCTGCTTCAGAGGGCCACAATGTCATCGTGGATCTATTAGTCAGGAGTGGCGCAGACATTAATGCCAAGGACATGCTGAAGATGACTGCTCTCCACTGGGCCGCCCAGAATGGCCACCAAAGGGTAGCGGAGACGCTCGTGAAACATGGCGCCGATGTTCACGCTCTCAGTAAATTTGATAAGACGCCGTTTGACATCGCAGGAGACATCCAGAATGCAGACCTTATGCTCCTACTACAGgaGGGAATGCAGAACCAGGTGAACATGAACGCAGAGGCTGGCATGACGGGGAGCTCGGCCCAGCCTCAGTTTATCATCCAGGGCATCCCAGGGCTCCCGGGGGGTGTGGTCAACCTGGCAGACCTCCTCAACAACATCAACTCGGGTAGCTACTCGGCAGGTGACTCTGAGGAAGCCATAGCAGCCAATTCTTTGGACCCCGGCAGCATCCAGCACATGGTGAACGAGCAAGGTCAAAGGGTTATCACCATAGTGACCGACCAACACGGTAACCTACAGACTGGAGGGCTTGGTCAGCCATTCTTTGTCACCATGCAGCATGGACAACAGATGTTGGCGATGCCAGCCAATCAGGTGACAGAGGAGGTGGTTGAGGAGGAACCCCAGCCCCCGCCTGCCCGCAAGAGGAAACTAGAGGCCTCTGCCAACCACATGGATTCTGGAGACACGGAGCAGTTACAGAGGCAGCTGCAGGAGGCCAACCGGAAGGCCCAGGAGTACCGGCAGCAGCTGATGTGCAAAGAGCAGGAAGCAGAACAGTACCGTATGAAGCTGGAGGCCATGTCGCACAGCCATACCAACGGCACCTCTGAGCAGGAGGAAgtggttgaggaggaggaggaggaggtggtggtgctcCAGGAGGGAGACATCATCATTAAGACGGAGGAGCTGGACTCGGCTGAGGAGCAGGTGACGCTGGTGGAGTCGGTGCCCTCCCACACCGTGGTCATCTCATAACACCAGACAGACTGATGTCACTGATGGAAGGAGAAATGGACACGAACTCAGGCGACGGGGCAGGCTATCAGCTTTTTCCATAGCTCTTTTAAGTTTTTCCCCCCATCTgagttttttttaatgttttgttttgtttgtactATATTTACTTACTCTTTCTGCTGTTTCAgtagttttttttctctccctcaaatcatgttttttttatttttttaacaagtAGGGAATTGAGGCGCTGAATAGCAGGAGGTGCGTCACAGGTTGGTTGAGGAGCCGGAATGGGACCTGCTCAGCCTGTGGATAAAGTTTCCTGCCTGAAAAACGTGTATGCTATCTGAGAGACGGGTCACTCGGTCTCTGTCTGTGGCGTCTGAGACATGTCAGTGGTGTGGGAAATACATTTTCACGTTGCCAACTACATATCACAAGATGTCCAAGACGAGTCCATCCGTGGTGCCAGAGGACCAGTCTGTGGAGAGAacacttttgtttgtttttgttcagttCTTTCAGGTCACAAAAGTcgccctctccctcactcctacCACCCCCACCATCATGGGCTCCACTGCAATGGGAATTGTATTTAAGAATACCTATTTGAAAATAACCGTCTTACAGGGCATGCAGTTGGCAACAGTCATTCCCTGCATTTATTGGACTCCGCATTCACAATATAGTAATGAATTGTTTCAAAGTCAGGAATTGTTTTGACTTTCATGGCACCACGTTAGCTTTGTCCTCTGTGGGTGTTATGGTCCGTGCCACTTCGAGTGCAGCGGTGATTATAGGTTTACTGTTGCAAAcgccacccccccacccccccccaccatcTCCCTGCTGATGTCAATACAAAGAATAACGTCCTCCTGTTTAATCACTAGTAGTCCCACTCCCCAAAGCCGGAGACGGACAGGAATAAGGCTTTCAGATTGCTGTGTCCTTCTGACAATGACTATGTCCCGTCACTTGTTTCTGCTACAGTTACTGTGCCGTTTTGTCATCTCCCACCCTGAATGAGAACGTGAACAACGTCTGGGTTAACATTCATCTCTCAGGGTTGAAGGGTGTTAAAGGAAAGTCATCTCTGCCTGCTGTTCAGTAAGGGCCCAATCTAAACTTGAGATGCCAAAGCTGGTTTAAGTTGTGCCTACATTTTGCATTGACGTCAATGGGGGATTTCCACTGAAATTAGAGTTCAGATTTATCGGATGCTCTTGCCCAGGTTTAAAATGACTTTAGTGGGTCTAACTGCAATTTGAGTTGAACCATGTTGAGCGACagatataaatacacacacacaccaatttgaATATTTAAAATGTTTCTGTACACTGATCCTTGGTCAGTTTGAGAGGAGTACATCTTGTATAATTAATTTCCCACCATGGCTAATTGGGTGGATGAAATACACCACAGTTTTTGAGTTTCAgaattgaacccccccccccccccccccccccccccctcccagacgACCTCTTTACTTGGCGGAAGAGGTCTGCTGTTTTGCTGGAATACCGTTCCTCCACTCACCCATTGTAAACTTAGACCGCTCTCTTCCTTTGAGAAGTCGACGTTCTCCACGAgtatgatatttttttataagctCTCAGCAATCCTTTTTATTATGTacatataaaattgtatttttaagTGTATCTGAATGTTTTGGAATGTAGACTGCTTATATATGATTTCTAAGCACATCGTCCCTTTCTTAGTTTAGCATCTCTTTTCCAGATTGTACAGGCGAACATGTATGCACCAAATGATTAAATAATTCAATTTACCATGATTTGACGGGTTTATAGATCTACCTGTTTCGCTACTGCTCTCACAGTTAATTAAGGGCACTTGACCGAGCCACGAATGACTTTGTGTGGACTTTGCTTGCTTTGATTAAAAAGTATGAAACGCCCTTTTTAAAATGTTACAACTGGTATCTGGAACATGCTTTGAAGTGTTTGCTCAATAACTTCGGTCTTCTCAGAGATTGAGAACCGGTGGCGCTGGACCATTTCCTCCGTTTTGTTTTAGACATTGTTCCATATTGGCCAGCAGGTGGCACTACACTTTAACGGACTGATCTGGTTTGTGAAATGAAATTGAGCGGGGATCTTATCTATATTTCTTACCCTCAAATGAGTCGATTTGCTGCTAATACAGAAAGTGAAACGACTAGAGTATCGCACGGTAACGTTGAAGCTTTATTAATGCATTCCATTTTCTAACTCATTTATGTAAGGTGATATTTCACTTGTACTGCCTACCAGGATAAcataattgaaaataaaatacaagcTCGTACCTGCAAATGATGTGGATCTTGGGTTCAAAGACCGTTTTTAATTCTAGATCCTCACTGTAGTCAAGATCCTTCACTCACTAGTGTCCCTCAGGCACATTTGAAAGGAAAACTACACCCCAAAACTATTTCTGGTATTTCCATCAacaatggactgatgaaacaaataccaaTATTTGTTTTGGCTAGAGTTTTTCTTTTAACTTCCCTCATTTGATGCATGCAGGCCAACTGTTTGGGATTTGCATTGTCACACAGCTATTCCTGGCACTGCAGTGAAGTTACATGTGTTGTGAAGCTTTGGATTGTCTGATCGGACTTTTACCATAAAGCATCTGAAAACGTTCTGCTACAAAGACTATAATGGAATAGACCAGATCCAGAATTATAATTCTATCTCTAATGGGATACAGGAGACAGAACACTATCAGGGACTTTCCTCTTGACAGTTTTGAGAAGATAAGGAACGAGAAtgaatgtgacaaataatgtAGGATAGTTTTGTATAGTTTTTTTCAAGAAGTTTATTGACTATTTTTAAGAATCAAATAAATGCAAACTCTTATACGAGGGAGAACTGCTTTTTTTTTGTAGCAATATTCGGGTTACCTGACAACCTGTGTAATAGATGCTTCTAGTATGTTATTTCTGCCTGCTGCTGTAACCCCTGTTTGCGtacggttggagtcattaaaactagtttttcaaccactccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773389 lncRNA downstream 858 41649488 ~ 41649719 (-) True G1549861
TU1773358 lncRNA downstream 5929 41618290 ~ 41644648 (-) True LOC110496274
TU1772689 lncRNA downstream 148284 41502018 ~ 41502293 (-) True G1549241
TU1772661 lncRNA downstream 165199 41485019 ~ 41485378 (-) True G1549213
TU1772642 lncRNA downstream 177023 41473318 ~ 41473554 (-) True G1549194
TU1773427 lncRNA upstream 180570 41841712 ~ 41843057 (-) True G1549888
TU1773480 lncRNA upstream 210985 41872127 ~ 41873029 (-) True G1549939
TU1773484 lncRNA upstream 212915 41874057 ~ 41875450 (-) True G1549941
TU1773486 lncRNA upstream 240033 41901175 ~ 41923079 (-) True G1549942
TU1773522 lncRNA upstream 265587 41926729 ~ 41927158 (-) True G1549970
XR_005037483.1 mRNA downstream 4964 41638254 ~ 41645613 (-) False LOC110496274
XR_002469624.2 mRNA downstream 117115 41532331 ~ 41533462 (-) True LOC110496931
XR_005037330.1 mRNA downstream 119251 41530743 ~ 41531326 (-) True LOC110496269
XM_036952840.1 mRNA downstream 323037 41225685 ~ 41327540 (-) True LOC110496267
XM_036952839.1 mRNA downstream 328785 41225685 ~ 41321792 (-) False LOC110496267
XM_021572078.2 mRNA upstream 7118 41668260 ~ 41671516 (-) False LOC110496277
XM_021572080.2 mRNA upstream 43383 41704525 ~ 41721962 (-) False LOC110496279
XM_021572083.2 mRNA upstream 43383 41704525 ~ 41721962 (-) False LOC110496279
XM_021572084.2 mRNA upstream 43383 41704525 ~ 41721962 (-) True LOC110496279
XM_021572085.2 mRNA upstream 62172 41723314 ~ 41752045 (-) False LOC110496281
TU1772024 other downstream 741952 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 964936 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1258694 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 1961896 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 2002563 39642855 ~ 39648014 (-) False LOC110496816
TU1773336 other upstream 2294 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 7118 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 654144 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 698006 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 1233889 42895031 ~ 42897063 (-) False LOC118936491

Expression Profile