RNA id: TU1773336


Basic Information

Item Value
RNA id TU1773336
length 1539
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC110496277
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41663436 ~ 41671516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTGGTTGTCCCTGGTGCTGAAAAAACTGGCATGTGCGGGAGGATTTTACAGCATCGCCACATAGCAAGAGCGTGCCATTGTTATTATACCTCAGTGGAGCCGATCCTGCGACAAACAGAGGACCGTGTCAGCCAAGAACTATTTCTCAAGACATAAAAATGCTGGTGAAATCAAACAGCGAGTATGACTCCTTCCTCTACTGGAGACAGCCCATCTCCGCCCCGGACCTGTCCGAGCTGGAAGACCTGGGTGTGACCAAAAGCAAGCCAACCAAGAAGAGCAAGAAGGCCACCAAGAAACAGAATGCCGCCCTAGCCAAGCAAAGGAAGCAGCAAGAGGCCGAATTGTTAGAGTACACCACCTTCAACTACTGGAGAGAGCCTATCCCCAGCATCGACCTCCTCGACTTCAACCTGCTTCTGTGAGGACCATCCCATCTCAGCCTCCCAGTCATAAGAACCTCCCTCTCCTCACACTCACCTTATCTGAATAACCATGGCTTTTGTCAAGTTTCTGGTCCACCCAAAAAGAAGTACTGAATCTGTATTAGTCTGtactgtgttttttttgtgtataaCCTCTTAATAATACTGACAGGATTAGGGGTAGATGTTTTAACTTGCAGGTGACTGGCACTGTGAATGACAGTATAGCCACTTCTGCTTAGGTTTACTCCATACACGGGCTACATGACTCGTTTGGCTAATGTCAACGAACATAACTAGGTAGAAATGGCAACAAGGTCAGcctttaaataaatataaatagttCCATTGCATACTGACTGCAAGGCTTCTGTCTCACATTAAGGACTTACACATTCATAATTTGTGAGGTAACTTGAGTATGCTACATCATATTTTTGAACACTAACAAATGCAAAGTGCTGCCTCATTTGAACTTAGTGAAAATTCTTTCCCTTGACCTAATACAACCTCGAAGGGTAGTGCCAACCTGAGCCTTGGGAGTGTTTGCGTGTAGTATGTATAAGTAAGAGAATGTaaagcaaagcacctccacacagAACAGATATTGTACAAGCACTTAGGGAGCCACAAACATGACTGTCTTTTGCGCTTTGTATTGGTTGCCTTGTGATTTGTTTCAGACActgaactgactgactgaatttTATTTATTAAGTATGCTGCTTTCAGGCTGCCCTGAGTAGGCCTCAACTGAGTGCAATGGCTGAGGGTAAATGTTAGATTCCACAATGCAAGTTGTGCAAATGCAGAGCTGGCCAactgttttctttattttctgcATAGACTACTGCACTGTCCGATGTTTAGTTTGAATGTCAAGGAAAGAATGGAAATGTTTAATGAAAATAGGGAAAATACGTGTTTTTAATTGTCAAGACTGATGTTGCAAAGTGTTCCTGAAAGTACGGAAGCTCTAACTGGACACTTGTAATCATAAAGCTAACTTTTTGTGAGATTGTACAAGGAGCAGTAAATTCCCAAATGTGACTCATCATACTTTGTCTTGACTTTTCTGAAATAAAGGAAGATATCCTgtgaaataaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773389 lncRNA downstream 13717 41649488 ~ 41649719 (-) True G1549861
TU1773358 lncRNA downstream 18788 41618290 ~ 41644648 (-) True LOC110496274
TU1772689 lncRNA downstream 161143 41502018 ~ 41502293 (-) True G1549241
TU1772661 lncRNA downstream 178058 41485019 ~ 41485378 (-) True G1549213
TU1772642 lncRNA downstream 189882 41473318 ~ 41473554 (-) True G1549194
TU1773427 lncRNA upstream 170198 41841712 ~ 41843057 (-) True G1549888
TU1773480 lncRNA upstream 200613 41872127 ~ 41873029 (-) True G1549939
TU1773484 lncRNA upstream 202543 41874057 ~ 41875450 (-) True G1549941
TU1773486 lncRNA upstream 229661 41901175 ~ 41923079 (-) True G1549942
TU1773522 lncRNA upstream 255215 41926729 ~ 41927158 (-) True G1549970
XM_036952843.1 mRNA downstream 560 41650577 ~ 41662876 (-) True LOC110496275
XM_021572077.2 mRNA downstream 587 41650577 ~ 41662849 (-) False LOC110496275
XM_036952842.1 mRNA downstream 587 41650577 ~ 41662849 (-) False LOC110496275
XM_036952845.1 mRNA downstream 587 41650577 ~ 41662849 (-) False LOC110496275
XM_021572074.2 mRNA downstream 588 41650577 ~ 41662848 (-) False LOC110496275
XM_021572080.2 mRNA upstream 33011 41704525 ~ 41721962 (-) False LOC110496279
XM_021572083.2 mRNA upstream 33011 41704525 ~ 41721962 (-) False LOC110496279
XM_021572084.2 mRNA upstream 33011 41704525 ~ 41721962 (-) True LOC110496279
XM_021572085.2 mRNA upstream 51800 41723314 ~ 41752045 (-) False LOC110496281
XM_036952847.1 mRNA upstream 51800 41723314 ~ 41752059 (-) False LOC110496281
TU1772024 other downstream 754811 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 977795 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1271553 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 1974755 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 2015422 39642855 ~ 39648014 (-) False LOC110496816
TU1773748 other upstream 643772 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 687634 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 1223517 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 1223517 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 1223517 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile