RNA id: XM_036952848.1


Basic Information

Item Value
RNA id XM_036952848.1
length 5323
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110496281
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41723314 ~ 41752064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATTCAAATCAGGGAGCCAAATGAACGGCTCTTTCACAGATGCGATTCGGTCCCCGACGTTCACCAAAAAGAGCCGTTCAAAAAGAGCCGTTCGTTCGCGAACGACCCATCACTGACACTGTGTACCCTCCAGGAGCTTCTGCTTTTCAAAACGTGGTGTATGAATATTCGTCAAATTGTATATGCAGAGGACACGGGTTTGTAAACATTCTGTTTGGCAGAATATCCCGGGAGTGCACAACGCTGGCGAAAATGGAGGGGTTTCTACAGAGATGTAGCGCTGCATTAAAGCCTCGTCTTTGAATGGATACGGCAATAGTGGATTACTACAGCTGTAGTAGATGTCGACCTGAATCGTTCTGTTTACCATGTGGCTGTTGTGGATTCACGGTTGAAgagctctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgttgttaaATATAGCCTCCCTTGGCTCCTGTTTGCCTGCTGGGGTCTGTCCACTGCTACGCCTGATGGGAGGTGCCGTGCACGCTGGGCAGTTCGGAGGGCAGCTCTGGGATCCACGTTGTCCTTGGCAACGAGGCCTGTGACCTCGACTCCATGGTGTCGTCCCTCGCCTTCGCCTACTTTCTGTCCACAACGTCTGGCAGCTCGTGTAAGACTGTGGTGCCAGTGCTGAACATCCCGAGAGCCGAGTTCCCCCTACGTTTAGACAACGTGTTCCTGCTGAAGGAGAGTGGGGTTCCATCAGAGGCTCTGGTGTTCCGTGACGAGGTGGACCTGGCAGGGCTCCATAGAGCCAAGAGGCTGGTTCTCTCCCTAGTGGACCACAACGTGCTTCCTAGTGCCGACATTGACTTGGAGGAGGCAGTTGTGGAAGTCATTGATCACCACCACCTCGAGAGGACACCCTCCACTTCCTGTTCAGTCACCATGGAAACCGTGGGTTCCTGTGCCACCTTGGTGACAGAGTACATTCACCACAAGGCACCTGAAGTGCTAGACAGACAGGTGGCCCAATTATTATACGGGGCCATTGTGCTGGATTGTGTCAACATGGCCCCAGAGGCAGGCAAGGTCACACCCAAGGACAGCCTTCTGGCCTGCCTACTGGAGTCGCGCTTCCCAGACCTGCCACCCAGGGGTGCCCTCTTCCAGTCCCTACAGAGCGCCAAGTTTGACATCTCAGGTCTTTCTACAGAGCAGATCCTGCTGAAGGACATGAAGGCTGTCTCCGGAGGCGACCTGAGACTGGCAGTCAGCGCTGTGTACATGACACTAGATATGTTCCTACAGCGGAAGAGCCTTCAACGGGAGCTTTGTGAGTTCTGTCACAAACATCGTTTTGGTGCGGTGGTCGCCATGACGATCTCTTTCAATGAACGCAGCGAGCCCCATCGGCAGCTGGCGGTCTACAGCTCCAGCACcctctatagggaggagGTGAGCCAAGCATTAGAAAAGGCCCGGAACCCCTCTCTGTGCACCTCTCCAATGAGCAGCCCCTTCAATGACATCAAGTCCTATCTCCAAGGCAATGCGCTGGCCTCCCGCAAGAAAGTGCTACCTATCCTCAAGGACTTCCTGAAGGAGTGGGACAAGAAGCAAGTGCATTGCGGGGAGACGGAGGACTTTGAGGAGCTGGACAACcactttgaccccacggggtCGCCTGGTATCGACGGAGACTCCCGCCCCCACTGCTTCTCGGCCTCTCGGCACCACCGTCGCCGCCTGTTGGGCGCTGAGGACTCTGGGATGGAGGAAGACTTCCAGGTGCCGGCCACACCCATGAACAGTCTGGTGGAGGGCTGTCCACTGGACGCCGGCCTGCCCCAGATCAGCGCGGAAGCCATTTTGGAGAAGTTCAGCTGCATGGTAGGGGAAGCAGGGGGTAATAAAGATGTCAGCTGGCCAGGTGATCAATAACCTTCTGTTGATGCCTTTAAATCCTAGTGCCCCTGGCTCTCTGTCCGCGTGCACTGCAACCCAACCAAAAGACTATAAGGAGTGTTCAAACTCAGAAGCATATCAATCAATTGTATGTTTCATAAGGGACATCTCATAGCGGATTATAATGACAATCCAAGGGGCCATGTACAGTAACTCACTCACTGGTTATATAGCAATCCAAGGTTTTATATCAGCAGCTCCGGTGATTGACTGGAAACAGGGTTGTGTTCAGGAGGAACAAAACCGCCCAAAACGGAGTGAAGCAGGGAGGTACCATCTTAATTTATCTAATAAGAAATGCTCgtttttgttttccgttgcaaaacgttttgctacggtgtgcccaaatgaacacaaccctggactGCTGTGGCCATCAAACTGATCACCAAGTTCTTATGGATGCTTTACTCAAGTCAGGACTAATAACACCATTACGAAGGATAGAACATCCTTCTAAAAGACTGGCAACCGGATGAAAAAAGCATGACTTGTACCTTCGAAGACTCCAGACAACAATGAAGGTTCaattgtgttttctctctgtaTCCCATCTGAGTACATGGGACTGCCTCATTGGTTAGTGCCATCTCCAAGTGTAGGGGGAGTAGATTGGACATTTGGAGAATACATGATGGACTAATGTAATGAATCTTTGAAAGGCCTATTTCAATGTCACAGGCATTTGAGTGAAGCTTTATTTTGAGGAGAATTTTGCCCTGGAGAATGACTTTATCCATTTTTGCAGCATGTGTTTCAGTAGTCCTGGTCCTTGAAAACTGCAGAGTTTGCTGTTTTTTAGTGAAACTTATCTATGTACAGCTTCAGTAGGGAGTTATTGAGCTGATGATTGAGCACGTGATATCTACTGGCATGTGTGTGAgcgcgtgtgtgtctgtcagtctgtctgtccgtccgtccgtccgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctggagtTCTTGGTTAGCGTGATGTCATGATGACATTATTATCAGGGTTGTTTCAGTCCATAGTTCTCCTCATTGTCGGCATCCATCTGGAAAAGAACGAAGGGAAgaacacacaccctccccacaaagagagagaggtggagagatacaTACCAGATGCCGGATGCAACTGCTGTTCATTCATGCATATGAACTGCCTGCCCCCAGTCAGATCTCGAAAATTGCAGGTTTCCTTTTTTTcccgtcatgaatcttgttctggaggcatctctgcagagtggtcactagctggcacagccacaaagtcatacctaaccttaaccacactgctaaccctaatgcatAAACCTaaacttaaattaagaccaaaaccctttttgttttcatgaatttgtaCAATATAGACATTTTTGAGTGTGAGGCTAGCCCATCTACCGGAAATCACATAGTTTTGCCTCAaggacaagactcatcccaataaacGTTTACCTGTGCTaaatttactctctctctctctctctctcgctctcgcggGTTTTTCTGAGATTTAGATCTCAAAGCTACTTCAGCTGCCCAAATATACACAAATCTTATGTGGAACTTATCGTCTAGCTTATCGTCTAGATTTATTCAGGGAATTACCATTGATTATGTCGTCCTAATGACATCATAACATTTTGAGAACAAATTAAGTAATGCAGAGGTTGACTTCATGCATACAATCTTTTGCTGAATTTTGTTCAGCATGTTATTCCTGCATTACAAAAAACGGTGATACGTTTCTATTAATACCCCCCTTTGTATTTTTGAGTTACCCGACATTtgcctgttcccagatctgtttgtgctcttgccaactcttATCATCAGAGTTGACTATACAGCATCAACAGATCTGGGCTAGTGATGAATTGCTCTGATGATGGTATCTGATCTGGAATCTGTGTCGCATACCCCAGAGAGCCTTGTGGCGGTTCATTTGAGGAAACATTACTGCATTAGTGCAGATGTCTGCTTCATTCGCTGTCTGTAGTTGGGCCCGAGGAGTAGGTTTGAACTTACTGTACCACAGAGATGTGCAAACACCCCTAGGAAAACCCACATACAGATGAATGCATAGACACAAACACATTAGACAGTGGCCCGATTCCATTTCAGTCACTAGTCTCTTTCTTTAGCTCTACCATTTCAGTGTTCCCAGATCACAAGGATTCGATAGGTCTAAGTAAGTGATAAGATGATGGTTCCTACCTCGTTCGATAGGGTATGTGAAGGTTCTACCATACACTCACCTATCCAGTCCTTTTGCATCGTGGAACTTCAAACTCTGAGAACTATGGAGGGCGGCACGGACTAAATTGGAATCCTGCTAGTCTAGCTGGAACTTCTGCTTTGTTAGAATTCCCAGATTTGATTTAATATGTATTTGAAAGCAGAAAACATCTGAGAATGTTGACTAGCCCTGTGCTGAACCCTTTAATGAAGATAGCATAGTTGATTATACCACTTGATTATATAAGTCAACCATGTAGTTTCATTGATTTATTCTCTACATCACAGCGAGAAGGTGTGTTCTGTCACATAGTTTATAGTAAAATAATATGTTGTGTCTAGGCTAGAATGGTATTGATAGTGAGTTTTCTATAAAACATACTCTGAAAGATTATTATATTGAGCCTCAGGTATTAAGGATCTGGCAATGCTTGGCTTGTAAAAAGATCCCTTGTGCTAATTATGTTTTGTCCTTCTTCTTTATCTCCAAATATACTTTTTGTTGAAATGCTTCATGGGAAATGTAGCTTATGTGGTGGACAGTGTAATGGCTCAGTGACTCTGCAGATTCATGTGAACACTAAAACGAGTTTGTTTCTCCCACACCATTTGTCATGATTACATGTTTTAGTAAACACTCTTGTCACTGCGGTGTTCTAATTTTTACAGGCCTTTAATTAAGGTTGGAAATGTTAGCTTGCTGGACTTGTTTAGCTTCTCAACAGGTTGAATGACAACAAGTAATTCACAATGTTGTTTCTTTAACCCAAACTGGTTCCCTTTTCCAGTTTCTCACGACTTTAATCCAAAGATGCCCTCCTCAACCCCTCTACATGCAGTTCCTTTCTGTAGTTTTGTGAATTTTATGCAGGACAATCGGGATTCAACTTCTCTTTTATTCAAGTACGCAATGTGAAAAAAGTGTTTGCTATGTGGTTCCTGAATGCGAAACCACATGTATGACAAGATTATAAGAGAAAATGTTCAACTATGCACTTCTATTAAAAAAAATGGATTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773389 lncRNA downstream 73595 41649488 ~ 41649719 (-) True G1549861
TU1773358 lncRNA downstream 78666 41618290 ~ 41644648 (-) True LOC110496274
TU1772689 lncRNA downstream 221021 41502018 ~ 41502293 (-) True G1549241
TU1772661 lncRNA downstream 237936 41485019 ~ 41485378 (-) True G1549213
TU1772642 lncRNA downstream 249760 41473318 ~ 41473554 (-) True G1549194
TU1773427 lncRNA upstream 89653 41841712 ~ 41843057 (-) True G1549888
TU1773480 lncRNA upstream 120068 41872127 ~ 41873029 (-) True G1549939
TU1773484 lncRNA upstream 121998 41874057 ~ 41875450 (-) True G1549941
TU1773486 lncRNA upstream 149116 41901175 ~ 41923079 (-) True G1549942
TU1773522 lncRNA upstream 174670 41926729 ~ 41927158 (-) True G1549970
XM_021572080.2 mRNA downstream 1352 41704525 ~ 41721962 (-) False LOC110496279
XM_021572083.2 mRNA downstream 1352 41704525 ~ 41721962 (-) False LOC110496279
XM_021572084.2 mRNA downstream 1352 41704525 ~ 41721962 (-) True LOC110496279
XM_021572078.2 mRNA downstream 51798 41668260 ~ 41671516 (-) False LOC110496277
XM_036952843.1 mRNA downstream 60438 41650577 ~ 41662876 (-) True LOC110496275
XM_021572087.2 mRNA upstream 27502 41779561 ~ 41812159 (-) True LOC110496283
XM_021572089.2 mRNA upstream 77096 41829155 ~ 41841256 (-) False LOC110496284
XM_036952853.1 mRNA upstream 77096 41829155 ~ 41841256 (-) False LOC110496284
XM_036952854.1 mRNA upstream 77096 41829155 ~ 41841256 (-) True LOC110496284
XM_021572100.2 mRNA upstream 194203 41946262 ~ 41962098 (-) True LOC110496288
TU1773336 other downstream 51800 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 51800 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 814689 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1037673 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1331431 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 563227 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 607089 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 1142972 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 1142972 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 1142972 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile