RNA id: XM_036952853.1


Basic Information

Item Value
RNA id XM_036952853.1
length 2592
RNA type mRNA
GC content 0.56
exon number 11
gene id LOC110496284
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41829155 ~ 41841256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCACCAATTGGAATTTACGTTTGCTTTGTAGTCAGGCAGACATGACATATTTGTCCAATCACAAAACAAATCTGAAAGGGGATTTTTGCTGTATCTTTGGCTCAGAGGCCTCAGGGTGTGTTTGCCACCACTGTGTGAGCAAACAATGACGGAGGACAGGCTGAAGGCGGACCCCTCCAAGCGGGAGGGGCTGGACTCAGTAGAGGGAGACACAGAGCCCAGCCTGCTGCTGCAGAAACTAAAGAGCAACATCTCTAAGAATGTACAGGGCAAAGTGGACGTTATCCTGCAAGATGTGCAGCGCTTCTCTGACAACGACAAACTCTACCTTTACCTCCAGCTGCCTTCTGGCCCCAGTTCAGGGGAGAAAAGTCTGGCAATGGCCCCGCTGGCACAACTTAGGCGGTGGTGTATTTCTGCATCGATGTCAGCTTTGGAGGAGAGAACACTGCCAAGcagcagcagtgaccCCAGCTCCTTCAACACAGCTGACCAGCTGCACACCTGCAACTGGATCCGCAGCCACCTGGAGGAGCACGCAGACACCTGCCTGCCCAAGCAAGACGTCTACGAGACATACAAGAGATACTGTGAAAACCTGCAACACAGGCCTCTGAGTGCTGCCAACTTTGGGAAGATCATCCGTGACATCTTCCCCAACATCAAAGCCCGGAGGCTTGGTGGCAGGGGACAGTCCAAGTATTGTTATAGTGGAATCCGCAGGAAGACGGTGCTAAACATGCCACTGTTGCCAAACCTGGACCTGAAAAACGACCCGTCGGAGCTGACGGAGCTGGTGCAGACCTACAAGCAAGAGGTGACGGAGGCGGCTTGTGAGCTCATCTGTGATTGGGCCCAGAAGATCCTCAAGCGTTCCTTTGACACAGTAGTCGAGATCGCCCGTTTTCTTGTGCAGGAGCACATCGTCAACCCGCGCTGCAGCCAGGCTGAACTTGTCACTTCTGCCGCTATGGCAGGAGGTCCTGCAAAGCCCCACAAGGTGATCAAGAAGAACCCAGTACCATCCAAAGGAGGTGGACCAGAGACGGAAGGGAGCGCCTCTGAAGCTAAGGTAAGGGATAAAGACGTTGGGGATCAGTCGTTGCCAGGGAAACTGCAGTCCAGTGACAAGCCTATGAAAGGGGCGGAGTCGGTACGCCCGGGGGGTCGCGAATTGCAGGTGGAGGCTCTGATGAAACACTTGCCCCGAATCCTGCCTCGCAGCTCTGTCCCGGAAAAGTCCCAGCTTTCGGTGCGCTCCTCGCCTCCCTCGCTGGCGCCCAAAGACGCAGGCGGCATGAAAGTCATCACAATGACTGCCCTGCCCCAGCAGCAAGGGGGCGCTCTCCCCGTCATGATCCTCCCCCAGAGCGTCAGCCTCTCCTACCCCGACAGGGAAAAAGCCCCGTCAATCACCATGGCGCCCGTGGCACCAACGTCGGTGGTGCAGAGGGCTCGCGCAGTGGGCAAACGGGCCCCCGAGGCAGCAAGTGGGGGCCCCGGGCCAGGAGGCACGCCGGCCAAACGGAAACGAGGACGACCCAGGAAGCCACGGCCAGAGGACATCACCCCCCCGCAGCCGCCCCCTCCACCCTTACCCTCGGTCAACCAAGCCCCTATTATGAATTCCCTCACCGGAGGGGTGATCCAGAAAgcctgctcttcctcctcctcccaggtgGTGGAGGTCGTATTCCAGGACCAGCAGGCCTTGGTACTAGGTCAGCTGCATTCGGTAGCGGACACAGGTGACCCAGAGCACCGGGGCGTGGTGCTCGAGACTGACCCACGGCCCGTGCTGCTGCTGTCAGGGGCCAGTCACACAAACTGGGACATGGGCAGGGCCATGGTAGAGGTCATCCAGAGGGCCCCGAGACCACCCACCATCATCACcaagaacaacaacaactccCAGTCTACCCCCCAGCACCGCCTGCCCCTGCCCACTGTGCTGGAGGATCGAGGGGAGGTGGAGATCACCCTCACCCCCGTGGAGCCTTCGGACGATCTGCCGACCCCCACTGGCCAGGCTAGCTCGACCCCCACTGCCCAGGCTAGCTCGGAAGGTGGCCCCACACCCGATGACAGCTCTAAAGAACCTAGCCCTGGCCTTCCTTGTCCCAGAGACTAAGGAGCACTAAGGGACTTTAAACTACCCTCAGGGGGAGGATAACCACCCCCAATCATCTTCTCCCAGGTAGCGTCTTCTCCCCGATTGGTGGAAATCCAAGATTGGCAGCGCAGAGAGCCAAGAAGGATCGATGAAGCCTAAACACTATTAATCCCTGTTGACCTTCCGTTTATAACTCTTTGCTGTGACTCTAACTGCATGTTTGTCTTTGTAATTGTGAGCAGAGAGAGCGATAAAGGCGGTTCCATAGTTCTGATGACGAGGGGGGGGGTATTTACGGGTTCGGACCTTTTAAGGTTTTAAGTGCTACTCTCCCTGAGAGGAACTCCCCtcagtgtttattttattttaatgatatacagttgaaattggaagtttacaaacaccttagccaaatacatttaaactcagtttttcatcatTCCTggcatgtaatcctagtaaaacttccCAGTCTtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773389 lncRNA downstream 179436 41649488 ~ 41649719 (-) True G1549861
TU1773358 lncRNA downstream 184507 41618290 ~ 41644648 (-) True LOC110496274
TU1772689 lncRNA downstream 326862 41502018 ~ 41502293 (-) True G1549241
TU1772661 lncRNA downstream 343777 41485019 ~ 41485378 (-) True G1549213
TU1772642 lncRNA downstream 355601 41473318 ~ 41473554 (-) True G1549194
TU1773427 lncRNA upstream 456 41841712 ~ 41843057 (-) True G1549888
TU1773480 lncRNA upstream 30871 41872127 ~ 41873029 (-) True G1549939
TU1773484 lncRNA upstream 32801 41874057 ~ 41875450 (-) True G1549941
TU1773486 lncRNA upstream 59919 41901175 ~ 41923079 (-) True G1549942
TU1773522 lncRNA upstream 85473 41926729 ~ 41927158 (-) True G1549970
XM_021572087.2 mRNA downstream 16996 41779561 ~ 41812159 (-) True LOC110496283
XM_021572086.2 mRNA downstream 77091 41723314 ~ 41752064 (-) True LOC110496281
XM_036952847.1 mRNA downstream 77096 41723314 ~ 41752059 (-) False LOC110496281
XM_036952848.1 mRNA downstream 77096 41723314 ~ 41752059 (-) False LOC110496281
XM_021572085.2 mRNA downstream 77110 41723314 ~ 41752045 (-) False LOC110496281
XM_021572100.2 mRNA upstream 105006 41946262 ~ 41962098 (-) True LOC110496288
XM_021572102.2 mRNA upstream 168593 42009849 ~ 42014114 (-) False LOC110496289
XM_021572103.2 mRNA upstream 168593 42009849 ~ 42014114 (-) True LOC110496289
XM_036951048.1 mRNA upstream 187034 42028290 ~ 42035215 (-) True LOC110496292
XM_021572107.2 mRNA upstream 196018 42037274 ~ 42046633 (-) True LOC110496293
TU1773336 other downstream 157641 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 157641 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 920530 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1143514 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1437272 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 474030 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 517892 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 1053775 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 1053775 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 1053775 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile