RNA id: XM_021572103.2


Basic Information

Item Value
RNA id XM_021572103.2
length 1982
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110496289
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42009849 ~ 42014114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGACCGGGTGCAACGCATTTGATGACGTGCGTATTCATCAGCGTTTACAACATGACTCAAAATGGCTGTGCTCTTCTCCACTGGACGGCTACTCGGGAACTGAAAGAAAAAGCAACCTAATTACACCAACAATTTGTTCGACATCTGTTAAGGTATCAGCCATTTTGGACCATAGAGGATAATTCCACTATGACAAGCTTCCAGCCTTGGTTGTAATTGTGGCACACATCTCACACACCTGCATGGGGAGGATGGAGAGCGATTGCAGAATCCCCATGTTGTGCTTGAGGCCCAGAGTCCTGGCTTTGCATGCACTCTTCTGGGGTTTGGTGTCTCTCAGAGTGTTTGGTGCAGCTCTGCTGAGTGAGGAGAAGACCACAGTGGCCAGGCCGGTAACCACCCCCTGTTGGCAGATGGAGGAGTTTGTGGTTGCGGTGGAATGCTCCCGGTGCGACGCTTTCCAGTCGTCATGGGCAGCATGTACTCAGACGGGATACGTGGAGAGGATCAACTGCACCAAGTCTAATAAAGACGAGTACAAGAGCTGCCGCTCTACCCTGATGGAGGAACACCTTTTCTGGAAGTTTGAGGGAGCCATGTTGGGCCTTACCATACTGTTCGCCCTCGTAGTGGTCGCTAGGCAACGTTCGCTGGACCGGCTTGCCTCCGAGAAAGTCCGCAGGCAGATCGAGTCCATCTAGCACAGTACACCAGAGTGAAGAGACTAATAGACCTCAACATAGTCGCTCAGCTCATTTCAAACTCTTAAGAATGAACAGAGACAATGAATTTCAACAGCATGGAGGTCTGGAGAACGGTATATCCGACAATGGGCCAGGCTTACTGGAAAACGGTTTCTAAATTTTGTTATTGAAGAAATGAAAATTAAATCAAGATTGACAATGAAACTCCAGCCCTAATTATAACCCTGCCAAAGGACAAATGATGAACAGTGTCTGGCGTTTTGTCAATGGAATTAATATCCCTAAAGGGAATGGCTCTTCTGAGCAGTGAACTTGCGTTACTTTGATCTAGACAAAGTCTGTGAAATTTATGAATGTTGGGAACTGGCTGCATTCTAAGTAGAAGACAATTGATGGATTCGTTTAAGCCACATACATGGTTCTTTAATTACgtttgaattttttatttttttgcctgtATACAGAATTGTCTGACAAATGGCAAACAAGTTTCTGGCACATGTTTCTGTTCTCTGAGAGAACCAAGAATATAATATAGTGTCAAATGCCCTGTCTCACTTGGAAACATGGACTAATAACTAGGTCTGTGACTCGAATGGATCAAAAATAAGTCTTATTGGGgcataaataagaatttgttcttaactaacttgcctagttaaataaaggttacataaaaaaaaaaaaaggggatgGGTTTGCATAGTGTTATTGTGTACTGGAGCATGAGTGTCATGCTGCAATGCTGGTTTCATATTTCCAAATTTCAGTATTGGTGTTCTACCGAAAGTCTACAATCACTATGTTGTGAAATCTTGTGTGTTTGGAGATTCCATTGCAGACATGGTTCTAAATGCAAACACTAACATTTGACTACTAGTGTTTTTGATAGGCTATAGAGTTTCCAATATACACGACACACATTCATTTTAAAAACTGTTGGATTTCCACTGATTGTGACTCTTTTTTTTAATGTTGGTTGGTCTCTGAGCTTAGTGATTGAACAAATCTGGAAAATCTTGGCAAACTAATGATTTTATCATATTTTTACATTTCAACTGTAGATAATGTATTTTTAGGAAAGGTGTAAGATGTTTTCAAACCTCAGCAGCTGACAGATTACAAAATAAATGGGGGGGGGAATCTGGGTTTTTGTTGTAATTAAGTCCACTTTTCAGGGATATAAGGGACAACACAAGTTGAATATGAAAAAGATGCTTCCCAGAGTCAACTTAGCCTACAGTATTCGTATCAATACACTTTGATGTACCAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773573 lncRNA downstream 16743 41992853 ~ 41993106 (-) True G1550020
TU1773558 lncRNA downstream 37082 41972538 ~ 41972767 (-) True G1550006
TU1773529 lncRNA downstream 67683 41941726 ~ 41942166 (-) True G1549977
TU1773525 lncRNA downstream 79845 41929778 ~ 41930004 (-) True G1549973
TU1773524 lncRNA downstream 81380 41927970 ~ 41928469 (-) True G1549972
TU1773542 lncRNA upstream 74121 42088235 ~ 42089180 (-) True LOC100135825
TU1773549 lncRNA upstream 88334 42102448 ~ 42102902 (-) True G1549997
TU1773548 lncRNA upstream 89778 42103892 ~ 42104540 (-) True G1549996
TU1773636 lncRNA upstream 154952 42169066 ~ 42169326 (-) True G1550073
TU1773667 lncRNA upstream 177748 42191862 ~ 42192144 (-) True G1550104
XM_021572100.2 mRNA downstream 47751 41946262 ~ 41962098 (-) True LOC110496288
XM_021572089.2 mRNA downstream 168593 41829155 ~ 41841256 (-) False LOC110496284
XM_036952853.1 mRNA downstream 168593 41829155 ~ 41841256 (-) False LOC110496284
XM_036952854.1 mRNA downstream 168593 41829155 ~ 41841256 (-) True LOC110496284
XM_021572087.2 mRNA downstream 197690 41779561 ~ 41812159 (-) True LOC110496283
XM_036951048.1 mRNA upstream 14176 42028290 ~ 42035215 (-) True LOC110496292
XM_021572107.2 mRNA upstream 23160 42037274 ~ 42046633 (-) True LOC110496293
XM_021572108.2 mRNA upstream 33987 42048101 ~ 42056179 (-) False LOC110496294
XR_005037487.1 mRNA upstream 33987 42048101 ~ 42056179 (-) True LOC110496294
XM_036952861.1 mRNA upstream 42273 42056387 ~ 42073809 (-) False LOC110496296
TU1773336 other downstream 338335 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 338335 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1101224 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1324208 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1617966 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 301172 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 345034 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 880917 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 880917 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 880917 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile