RNA id: XM_036951048.1


Basic Information

Item Value
RNA id XM_036951048.1
length 2879
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110496292
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42028290 ~ 42035215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTGTATGCCGTAAAAGAAAGATGGCGGCGGATATTTTGTACACAATCCACGTTTGTCTTATTTATGCTTTTAACGGTTCGGTTTTCTTCTAGTTTTATCGGCAATGGTAATAACTACCGTCGGAATGTATCCCTGGAGCTGAACCCTGGTCTGAACTCCTTGCTGACACCGCTGCCCCCTGGTGTTGGCTTGCTCCATGTGCGGGCGCTCGGCAAAAACAACACACTGCATTACCTCCTCTGCAGCCAGGGGGCGCCCGCGTTACTACTGGTGCACACAAGCTCCATTTCATCCAAGGTGGAGGTAGACTGGCCTGCCTTCCTCATGCAAAATACCACAGGCAGCCTGAAAGTGACTCCAGAGAGCAGTGTTCTGTACAGCAACGCACTCGTCTTTACCAGGCTGTGGGAGTATGACGATGTCAACGACACAGCTGACCCTGAGCACCTACCCCCCTCCAGCTTTTTCCAGCCCTACGAGCTGCAGAATTTCACCTGGGGCGACCTGAACAAGACATTGGACCCCACAGGCCACACCGCCCTGCTTTGTGGAAGAGACGCCAGCGAGAGCTTCAGCAATGGCTTGCTCTGTCTGAAGTTCTCAGCCTTTGATTTTGAGGGGCGTGACCAAGGCTGGCCCAGTCTCCTCCACAACGCTAACTCCTCCCAGCTGAGGATGGGGCTGGACGTCGTGGCCCCGAGGTCCAATCGCTCCCGCTTTTCCCTAGAGCTACAGGCCGTGGGAGACTCCCAGCCCATGAGCAGAGTGGACATGCTCCGGTCAATAGATGACGAATACACACCCTCCATATTCAagGTATCTCAGTGGGTGTCCTCTCCAGTCAACTCCACCTCCCCTGTTCTTGGCTACGCCCAATGGAAGCCCGTGGCCTACCGCAGGCCGTCGCCTGTGTTTGAGGATGCCACTCCCTGCCGGCACTCAACGCCTGTCCCTGTAGCCCAGCTTCCCCCCTCCGGCCTGGTGCGGGCTTATTTTGGAGGGGAGCACCAGACCACCGGGCTCAACATGACCTTCAGTATCACTGGAGACCCATTCTACAACACCACCTCCTACCTTAGCTGGACTGTGTTGGTGGGACTGGGCTCTCCTCCTGTGGACTTGTTTTCTCCCCTGGTTCTGGTCATCATGGTGGTGGGGCTGGGCACACCCATGCTGATCATCCTGCTGGgcggggtgtgtgcgtgtgtccgcAAGAACAGGCCCCAAACGCAGGTTTACGAGCCAATCCAGGCCAAGCCAGGATATGTGTCCCGCCTTTAACCATTTTCTAGCCAATGAACAGAGACACCTCTGGGCACAGTTTTTCAAAAGTTTTCTATCTGGATTTACCCTATCGGATACGATTAAATGCATAGAGAAAGTGTCCGGCAGGTGTCAATCTTTTTAAAAATATGAGGTGCACTGATACATGTGGAATACACCACTTGCACGGAGCTCTGTCTAATACGGCCATCCATTGTTGGCACAATCAACCAATAAGTCTTTGACAGAAACTCATTTCTAACCACTTGCATAATTTGGGAATAGGCTGAATCATCCTGTGGACGAGAGTCAATTAATGAGTGCGTTTATTTCTGCTTGTGAATACAGCAAATTGTGAAAATGCTTCTTACTGTAGTTATactttattattataatttttttaaactcaTGATTAAGTACACACTTTCAGTTCTGTGTAAAACAATATATTATCTTATCATTGTTGCTCAACAAACAGTACACGATGACATGTTACACTGAAGCTGTCTGTTTGGCACTGCCAAGATAGGATATACTGACCTCACATGGGTCCTACACTGTCTAATGATCGACTCACGCACATATAAATATCTGACGACATTAGAAGAGTCAGAAGggagcagggttttttttttctcaaaccCTGATCTGAGGTCAGTTTTTATTGTAATGGTTTAATAATTGGTGAAGATAAGCTAATCCTGGATCTGCACCTGAAGGAGACCCACACCTGGAGCAGTGAGAGGAAAATAAATCTCAGGGAAGAACCTTATAGAAACAAGGTTTGTTGCTTTCTTTCCAAACCCCCTGGATGTTAGTTATTCTTTGGGGAAATGGGAAGCATAGTTTGGGTCCATGTGCTCTTCAAAGTAAACTGAAATGTGATCATTCTAAAATATGTTTTAGGCTTGTTTTAAATTATTGATTAATGTTTATTTGAGATTCAATGTGTCAGTTAAATTAAGTTAGAAATCGGTATGGGATTAGAAAATGTTTTGTATGATCTTGTAATTAATGTTACTTTGACACCCAGTGTTGATTGTTGCCACACAACATTTTTTTGTCAAACTTCTCCTTTGGAATGAATTTAAAACATGCTTCATAATCAGGTTGTAATCACAGAGTAAATTACCTTGTGGAGTTTTTACCTGTGCTTTTCTATTAGGCAACAATATGTTACCTTAATTTCAGAGCTAAATGCAAAAACACCAGTACCTGAAATATTATTATGCAATCTAATACACAGGTCATGTTCATTTTATTTTGAGGAGACTTTTAAATGAACTGAATGGTAATGTATTGTCTCAATCCatacaattgtatttttttttaaagaagaaatGGATAGGCAAGTTATTTACTGCTCATTTATTTTCTTTGTTAAACAATGTCTGGTACACAATGTCATTACAGAAATGTCAACATGTTTAAAAAAGCAACAAGGACCTCTAAATATAACTGGTTTCTTGGCCACATTTTATGTACACAATATTGTtttagattatatatatatatatatatattttttttttccatcTCTACAAGAGATGGGAAAAGGCAGGCTGTTAGAATGTACATAATTGtattacaaaatatattttttctttacAAAC

Function

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773573 lncRNA downstream 35184 41992853 ~ 41993106 (-) True G1550020
TU1773558 lncRNA downstream 55523 41972538 ~ 41972767 (-) True G1550006
TU1773529 lncRNA downstream 86124 41941726 ~ 41942166 (-) True G1549977
TU1773525 lncRNA downstream 98286 41929778 ~ 41930004 (-) True G1549973
TU1773524 lncRNA downstream 99821 41927970 ~ 41928469 (-) True G1549972
TU1773542 lncRNA upstream 53020 42088235 ~ 42089180 (-) True LOC100135825
TU1773549 lncRNA upstream 67233 42102448 ~ 42102902 (-) True G1549997
TU1773548 lncRNA upstream 68677 42103892 ~ 42104540 (-) True G1549996
TU1773636 lncRNA upstream 133851 42169066 ~ 42169326 (-) True G1550073
TU1773667 lncRNA upstream 156647 42191862 ~ 42192144 (-) True G1550104
XM_021572102.2 mRNA downstream 14176 42009849 ~ 42014114 (-) False LOC110496289
XM_021572103.2 mRNA downstream 14176 42009849 ~ 42014114 (-) True LOC110496289
XM_021572100.2 mRNA downstream 66192 41946262 ~ 41962098 (-) True LOC110496288
XM_021572089.2 mRNA downstream 187034 41829155 ~ 41841256 (-) False LOC110496284
XM_036952853.1 mRNA downstream 187034 41829155 ~ 41841256 (-) False LOC110496284
XM_021572107.2 mRNA upstream 2059 42037274 ~ 42046633 (-) True LOC110496293
XM_021572108.2 mRNA upstream 12886 42048101 ~ 42056179 (-) False LOC110496294
XR_005037487.1 mRNA upstream 12886 42048101 ~ 42056179 (-) True LOC110496294
XM_036952861.1 mRNA upstream 21172 42056387 ~ 42073809 (-) False LOC110496296
XM_021572109.2 mRNA upstream 21172 42056387 ~ 42075432 (-) True LOC110496296
TU1773336 other downstream 356776 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 356776 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1119665 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1342649 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1636407 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 280071 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 323933 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 859816 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 859816 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 859816 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile