RNA id: XM_021572107.2


Basic Information

Item Value
RNA id XM_021572107.2
length 2527
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110496293
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42037274 ~ 42046633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACATTATGATTTGCTCGAAGGTTATTGGTTAACACACTGGAAGAAATCCGCCCCGCATCTGGATCTTCTTCCTCTTGTGCTGCCCAGAAGGTTCCAGGCCGTTgtcccacacacactgtcacgaTGATGGGCCAACAGGTTCTCGTGCTGAGCCAGAATATGAAGAGGGAGTCTGGACGGAAGGTTCAGACCGGAAATATCAGTGCAGCCAAGacgATTGCAGACGTCATCAGAACATGCCTGGGACCAAGGGCCATGATGAAAATGCTTTTGGACCCCATGGGTGGGATTGTGATGACCAACGATGGCAACGCTATCCTGAGAGAGATCCAGGTCCAGCACCCGGCTGCCAAGTCCATGATTGAGATCAGCCGCACTCAGGACGAGGAGGTGGGAGATGGCACCACCTCTGTCATCATCCTGGCGGGTGAGATGCTGTCCGTGTCAGAGCAGTTCTTGGAGCAGCAGATGCACCCGACGGTTGTCATCAGCGCCTACAGACATGCCCTGGATGATATGCTCAACCTGCTCAAAGATATCAGcaCCCCAGTGGACGTGAGTGACAGGGAGATGATGCTGAAGATCATCAACTCTGCCATCAACACCAAGGCTCTGAGCCGCTGGTCTGACATGGCCTGCAGCATCGCCCTGGACGCCGTCAAAactgtggagatggaggagaacgGACGCAAGGAGATCGACATCAAGAAGTACGCCAAAGTAGAAAAGGTTCCCGGTGGGATCATCGAGGACTCGTGCGTGCTCAGAGGTGTGATGGTAAACAAGGACGTGACCCACCCGCGCATGCGCAGAATGATCAAGGATCCCCGTATTGTGCTGTTGGACTGCTCCCTGGAGTACAAGAAGGGAGAGAGCCAGACTGATATTGAGATCACTCGTGAGGAGGACTTTGCCCGCATCCTGCAGATGGAGGAGGAGTACATCCAGCAGATCTGTGAAGACATCATCCGCCTCAAGCCAGACCTCATCTTCACAGAGAAGGGCATCTCGGACTTGGCTCAGCACTACCTAATGAAGGCTAACATCACGGCTATTCGCCGTGTAAGAAAGACTGACAACAACCGGATCGCCAGGGCGTGTGGCGCACGCATTGCCAGCCGTACGGACGAGCTGCGCGAAGGGGACGTGGGCCTGGGGGCGGGCTTGTTTGAGATCAAGAAGATTGGAGACGAGTACTTTGCCTTCGTCACAGAGTGCAAAGACCCTAAAGCCTGCACCATCCTGCTGAGAGGAGCCAGCAAGGAAATCCTGGCGGAGGTGGAGCGTAACCTGCAGGATGCCATGCAGGTGACCCGCAATGTGCTGCTGGAgcccagcctgctgcctggcgGTGGCGCTGCCGAGATGGCTGTATCCCAGCGGCTGATGGAGCTCTCCAAGGCCCTCACTGGCGTGGAGCAGTGGCCCTACCGTGCCCTGGCCCAGGCCCTGGAGGTCATCCCCCGCACTCTCATCCAGAACTGTGGCGCCTCCACCATCCGTGTGCTCACCTCCCTCAGGGCCAAGCACACCCAGAAGGGCAGTGTGTCGTGGGGGGTGAATGGAGAGACTGGCACCCTGGCTGACATGACCTCCCTGGGCATCTGGGAGCCACTGGCCGTCAAGGCCCAGACCTACAAGACTGCAGTAGAGacaGCCATCTTGTTGCTgcgcatcgatgacatcgtctcTGGACATAAGAAGAAGGGAGATGAGcagacaggaggaggacagggcgCTGAGTAGAGGGGTAGAAGGATTGGGaacaaagaggaggaagagggtaaTGGAGGAATAGGCAGTCTGAGCTATTTcttgttgttgcattgttgaaggaacctgcaagtaagcattttgttggacggtgtataccatgtgtatcctgtacatatgaTTAATAACTTAACAGCACTTTTATAAACCTCTCACTCAGATATTACATTTGTTATGGTCACtaagcagactgggatagggttGTTGCATGTATTACATACTGTATGAATGTACTGGATTTGGTACCAAGGAACTCAAGTTTAGTTTGgtttgtttgtgtggtgtgtgtttgtgcagtaTTTATGGCAGTAAGTGTAAGATGTGACTGAATATGTTCTCCTGGGATCAAGGTTTACCTCGGTTAGTCTCACGAGGCATTTCTTTGTTTGGAAGAGCTCCTTCGTGACTTGAGTTGAAAAACGGTTGCCAATGGATGGTGACCAAATCATGTGACGAAGTCATTTGAATGAACTACTAAAGCACTGTGATCCTATAGAAAAATAGACCTTGCAAATTATTTATAGCCTGCAATGTCTACCTCTGAAGGTCCTTTTTTAAATGCTGCATTATATGGATTGGATCGTCTTGCATTTCAATGAGTGAGTGCTTTTTTTCTGCAAGAAATAGTTGGAGTTACGGTGTCTCTGGTTCTGAATCCTGTTACTCCACCAGACCATTTCCCTCCATTACCCTTTACCTGGGGCTGTTACCTGTGATAGAATCAACCTCAATAAAAGTGGATACAAATGACA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0046671 negative regulation of retinal cell programmed cell death biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09495 CCT3, TRIC5; T-complex protein 1 subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773573 lncRNA downstream 44168 41992853 ~ 41993106 (-) True G1550020
TU1773558 lncRNA downstream 64507 41972538 ~ 41972767 (-) True G1550006
TU1773529 lncRNA downstream 95108 41941726 ~ 41942166 (-) True G1549977
TU1773525 lncRNA downstream 107270 41929778 ~ 41930004 (-) True G1549973
TU1773524 lncRNA downstream 108805 41927970 ~ 41928469 (-) True G1549972
TU1773542 lncRNA upstream 41602 42088235 ~ 42089180 (-) True LOC100135825
TU1773549 lncRNA upstream 55815 42102448 ~ 42102902 (-) True G1549997
TU1773548 lncRNA upstream 57259 42103892 ~ 42104540 (-) True G1549996
TU1773636 lncRNA upstream 122433 42169066 ~ 42169326 (-) True G1550073
TU1773667 lncRNA upstream 145229 42191862 ~ 42192144 (-) True G1550104
XM_036951048.1 mRNA downstream 2059 42028290 ~ 42035215 (-) True LOC110496292
XM_021572102.2 mRNA downstream 23160 42009849 ~ 42014114 (-) False LOC110496289
XM_021572103.2 mRNA downstream 23160 42009849 ~ 42014114 (-) True LOC110496289
XM_021572100.2 mRNA downstream 75176 41946262 ~ 41962098 (-) True LOC110496288
XM_036952853.1 mRNA downstream 196018 41829155 ~ 41841256 (-) False LOC110496284
XM_021572108.2 mRNA upstream 1468 42048101 ~ 42056179 (-) False LOC110496294
XR_005037487.1 mRNA upstream 1468 42048101 ~ 42056179 (-) True LOC110496294
XM_036952861.1 mRNA upstream 9754 42056387 ~ 42073809 (-) False LOC110496296
XM_021572109.2 mRNA upstream 9754 42056387 ~ 42075432 (-) True LOC110496296
NM_001124219.1 mRNA upstream 41546 42088179 ~ 42093200 (-) False LOC100135825
TU1773336 other downstream 365760 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 365760 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1128649 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1351633 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1645391 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 268653 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 312515 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 848398 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 848398 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 848398 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile