RNA id: XM_036952861.1


Basic Information

Item Value
RNA id XM_036952861.1
length 5470
RNA type mRNA
GC content 0.55
exon number 25
gene id LOC110496296
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42056387 ~ 42075432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tGCGGACGGAGAGGTGGGGGGCGGAGAGCAGGAAGGGGCCAGTCCAGAGCTGGAGATTGACAGGGAGCTGGACCGTGACCTAGAGAACAAGTCCAGACAACACAACTTGACCACGGCCAACGTCCGCAACATCATTCATTGATCACCAATGAGCATGTGGTGGCTATGATGAAAGCCGCAATCAATGAGACGGAGGCCGTGCCTGTCTTTGAACCCAAGATGACACGTTCCAAATTCAAGGAAGTGGTAGAAAAAGGAGTGGTAATTCCCACTTGGAACATCTCACCCATTAAAAAGGTCAATAAAGAGAAgGCCCCACAGTTTGTTGACATTCAACTAGCGGAGGAAGACTCCTCTGATGAAGAGTACTGcccagacgaagaggaggaggacgagacAGCGGAAGATacaTTTCAGGAGAGTGACATGGAGAGCATGGCCTTGTCTCCTAGAGGAATCAGAGGAGGCTTCTACAGGGGAATACACACACAGTGGGACGACGACAGGAGCGTCAGCCCCATGCAGGTACAACGCAGCAGGTCCAGACACCTGACGGTGGAGGTAGTCCCCATgggccctccccctcccccccaacctTCCTCCTCCCATGGCCCCCAGGGTCCTTCTACCACCAGGGCCCCTCCAGACTTCAGCTTCCTGGAGAAGCTCCATGCCGTCGAGGAGGAGCTAGCCATCAGTCCAGTCTGCCTGGAGCCCTACCAGCCACCCATGGCGGACGGTCTGATGGCGTGTCGTACTCGCTCCAAGAGGCCCCTCCGGGACGTCCCCATGGGCCAGCTGGAGGCAGAGCTCTGCGCCCCCGACATCACGCCTGACATGTACGGGTGTGGCTCCGCCCCCGAGGACCTTGAGTGGACCCACTGGCTTCAGGGCATCATGACCTCTGACATGTACAATGATGAGGAAGGCGACGATGACGACGACCCGGAGTATAACTTCCTGGCAGAGATTGACGAACCCGACGTGGAGGATTATCGTAACGACCGAGCCGTCCGCATCCCCAAAAAGGAAGTGAACCAGTTGATGGAGGAGTTGTTTGAGACCtTCCAGGATGAGCTCACTGCTCAGGAGCAAGATGAGGAAGGacacgaggaagaggaggagagggaggaagaggcgCCTGCCCTGGGGAAGCCCGCCTTCAGTACCCCGCCAGATATCCCGTTGGGGGACCCCATGGCGGTGGTGACAGCAGGGCGCTACCGTACGGTGAAGGAGCAGCTGGCCGCCATCCGGCATCACCGGGCCCTGCTGGAGAGCCAGGGCCTTTTGGCCCCCAGGGCCCTTGTCACCAAGCCCCGTGAGCCCCCACCTCCATTCACACCCACCCTCTCCCACTGCCAGAGACTCCAACTGCAGCAGCAAGTCCAGCAGCACGTCCAGCTCTTAACCCAGGTCCAAATGTTGACCAGCCCAGTGGCTGCACTGCAGAGCGAAGCTGCCACCACCAAGCAGTTCCTGATGGAGTTACAGATGTTTGCCCAGCGTGGGGAGTTGACCCGGGGCCCAGTGGAGCCAGGCTTCACCAGTGTGTTCAACGCCTGTAACCTACAGGGGGCACTGTCACTGCTAGAGGAGCTCTCACTGTCCCCAATCCCTTACCAAGAAGCCCCTAACGAGCCACGAACACGCAGGAGAGTCCGGAAGCATCCGTCGATGCCCCCCCAGCTGGCATGGCTGTTTGCCACGCGGCCCGTGTTCCTGTACCCCGAGCTGCTGCCCCACGTCAGCCTGGACCCAGCCCTGCATTCTGCTCGCTCCGTCAGCATGTTCACCGCAGGAGAGGACTGCCTGATCGTCCTGGGCCTGAGGAACCTGGAGGAGACCCTCCAGCCCAAGGAGCTGCTGTGTCACTACCTGCTCCGTGCCAAGAAGGTCTCTCAGCTCCGTGACCACATTTTGGAGAAGTGTAAACCCACCCATGCCAACAACGTCATCAAGGCCTACCGGCTCCAGAAGGTGGTTCAGCCCATGCCAGTGGCCTGTGAACGAGTGAACCCGGGTGACCTGCGCCcctcagtggagagagaggagagagccatGCCCGGATGGCTGGGGAGAAGTTTGCCTTATATCTACGAGGCAATCGAAGATCTCAACAGCTCGCCAGATACAGAAACCATGTCGGCTTGTCAATCAAAGAAAGCCCCACTCAACACGCTTCTCTTCAGTTCTTCCAGGACCTTGGACTACAGCTTCCCACCCGCGACTCGCTACCCGCCCCAACTCCCCGACAGCCTTTCATTCCAGCGCTGTGGCTTCAGGCGCTGTCACCCTCCACCAGACTGTGACCTCTCGCTGTCCCTTGCTGTATCGCACAGTGCCCCCCACAGTCTGAAAAGTGGAACTACACGCTCAGAAAATAATTTGCAGACGGGTGCTGTGATTCAGCACGAACTGCAACCCATCCACCCTGCAACATCCAAACCTCCTCCTCTTCAGCATCCCACCAAGCCTCATCTGAAACATCCCCTCAGGCCTCAACCCAAACCTTCCCAGAAGCCCCTGCAAGTCATTCTCAATTTGCCTGCCCCAGTGGCTGCAGCTGTCCTTTGTCCCGCTCATTCCGCCAGGGTATTGGCCTCCCGATTGTCCCATTCCGCTCCATTGGCCGAAGACCAGGTTGCTGGGAAGTTCAGCACGTTCGCCAACCTCCGCAGGCTGCCCAGGCTGCTGCCAGCTCCTCCACCCAACAACAAGAACCCTCCACAAACAAACCTGAATACTGTGACCCCTAACAGTGGCGCAAACCTCCTTTGGTTTTCACATATGAATAGTAGAACCGCCTCCACTAGTACCGAAACCCAAACGTCTGTCTCTACTACGAGTCCCATCGAACAATTCAAGGACAAATCCACCAGGACCAGCCGGCGGGTGACGAAGGAACTCAAAAGCAGCCTGAAGAGTGAGGGTCAGCCCCAGCCTTCAGCCTCCCCGGAACCCCCTGCCCTGGACCAGGCTCTGACCCCTGACGACTATGTCACAGCTGTaatggaggaagaggggagagatgaagagaaagaggaCTGTGgcagggaagaggaggaaggggatgaTTTTGGAATGACCCTCCTGGCCCTGTCTGAGTCCTCGGCCAGTCCCCTGGGGAGCGTTGATTGCATTAACCCCATGGAGGAGTCAGAGGAGGTGCAGGAGATAACGCTGACCCTATCACCTAGACCGTCGGGCAtgggggacggagggagagagggtgacgaGGGGATGGGAGATCAGGAGGTAGAGGAAGCGGTATCACCAGCCTCCGAGGTGTCCACGTTGTCCGTGCCAGAGCTGCAAGAGACGATGGAGAAACTGTCATGGCTGGCGTCGGGGGGGAGGTCAGAGGACTCGGAAGAAGGCGAACGATCAGGCACACCCTCAGGCTGCTGTAGTAACACCCTCAACCCTCCCAGCTCAAAGCACGAGCAGCATCACACGGGAGAAGTTGGCAGCGAGGGCATGTCCAAAATCCCACCATTCCTCTGTGACTATGACGACGTACTCGACAGCGACCCCCTGAGGGAGAAGAAGGAAATGGCTTTCGCTCAGAATTATCTCAACAGGGTGTGCCATGCCCTGCAGGAGGTGCCGGGGCGTGTGAAGGAGTTTCTGGAGGTACTTTATGAGTTTGAGCAGGACGGAGATGAGCACACCTCTGTGGAACTCTTCACCAGGCTAAAGCCTGTTCTGAATGAGTGGCCGGAGCTGCTCCGAGACTTTGCTGCCTTCCTCCATCTCGAACAAGCCCAGGAGTGTGGACTTCTCGCAGAACAGCAGGCATTTGAGCGGAGCCGGCGCTTCCTGCGACAACTGGAGCTGAGCTTTGGGGAAACCTCCTCGCACTACTGCAAGATAGTGAGCGTCCTTCAAGGAGGCCCTACTCTCAGCCCTGCTGGCATCAAGGAGATGAAAGCTCAGGTGGCCACCCTTCTCCAAGGTCACACCCACCTGCAGGGTGAGTTCTGGGGTTTTTTCAACGAGCTCCACATACGGCCCTCGCCACAGTGTCAGACTGAGAACAGAGGCTGTGGTGATGTGACCAACACAAACTCCACTTCCCAGAGGTCATCAGCAGCAAATGCCAAGAGATGCCAAGGTCCTAAAACCCCAAAAGCCAAACGAGTAAGGGAGGATGAAGCGGACGAGGAGAAAGAAGGGGATCGCTCTAACCGCCCAGTCTGTGCTAAAAACATCTTGCTTACACCCAGTGGAGAGAAAGTCATCCTCTGGACCAGGGAGGCGGACCGTGCCATCTTGACCGCCTGCCAACAGAAGGGAGCTAATAAAAGCACCTTTCAGGCTGTCTCCACCCAACTTGACAACAAGACAGCCAATGAGGTTGGCGCCCGTTTCCAGGACCTCATGCGCCTGTTCCGTTTCTCCACGCAACGGGTCTTCTCCGATGAGGACGTTAGTGACACAGAGCAGCCAACCAGCAGCAGAGAGCCAGAACTGGACTGAACCGGACCCAACACCAAGGCTGCGATCAGCGGGGAAAAATGTGGAACGTTCAAATGGACATATACTGAGCGTGGCCCAGGGGAGGAGTACTGTTATAACAGTCAGCTGGACTGACCTGGGAGCAGTCCAAGCTACAGAAAAGGAGGAGCACTTGATTTAACAATCTCTGAATACTTGGCTGGGACTGTATAAGAATCTCTGACTCAACACTATAGGGGACTGCAAAGACATGTCTCCCTTTGATGGCACTATATGGGTCCACTAATGAGATGATTTTTTACTATTATGTGCATGAGTGCCATGTGCAGGCCACATGAGGTTCCTGGTGCTATGAACCATGTAGGTGGGAGGAGGTGCAGCAAATGTGAAGTACAATTGTCTTGATTGTATAAAAAAGGCCGATTGCAGAATGTGTTAATTTGGTCGTGGCTCCACATAATATTTAGTTTGCTGTTGAGGGGATTTAAATGAAAACGGACACATATACAGTAGCACAATCATGTTGAAATGATCAGCTGAAATATATATGTAATATTTTGTTAAAGGGGAAAACGGGTCATTGATTTCCAACAACCAGGTCAGGCCCCATGCATAAGCGACATATTCGGTCGCCTTGGGATCTCAACTTACTGTTACTTAAACTTACTgttgagttagaatagtagaatacacaaggtgcaatttcgaaatttggttgtgcatcagcagtttttctcatATCAGTTACTGACAGTCACTAAATTAGCTATGTCAGCTAACCATTTTTAGATTGGGTTGGGGGGGGCTGGCAAGACTAATTTACCATTCTTGCCTAGGGCAGCCCTTTTTCCAATTGTACAGTTTGCCATTGTGTTTTGTAATGAATCTACTGGTATTGAGTGGGCAATTGTGTATATTTGAATAAAATATGCACATTTGTTTTACAGTGGTGCCTTCCAGTTTATTGTTGTGTTGAAATAAAACATGAATGTGATTCTTACTTATACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773573 lncRNA downstream 63281 41992853 ~ 41993106 (-) True G1550020
TU1773558 lncRNA downstream 83620 41972538 ~ 41972767 (-) True G1550006
TU1773529 lncRNA downstream 114221 41941726 ~ 41942166 (-) True G1549977
TU1773525 lncRNA downstream 126383 41929778 ~ 41930004 (-) True G1549973
TU1773524 lncRNA downstream 127918 41927970 ~ 41928469 (-) True G1549972
TU1773542 lncRNA upstream 14426 42088235 ~ 42089180 (-) True LOC100135825
TU1773549 lncRNA upstream 28639 42102448 ~ 42102902 (-) True G1549997
TU1773548 lncRNA upstream 30083 42103892 ~ 42104540 (-) True G1549996
TU1773636 lncRNA upstream 95257 42169066 ~ 42169326 (-) True G1550073
TU1773667 lncRNA upstream 118053 42191862 ~ 42192144 (-) True G1550104
XM_021572108.2 mRNA downstream 208 42048101 ~ 42056179 (-) False LOC110496294
XR_005037487.1 mRNA downstream 208 42048101 ~ 42056179 (-) True LOC110496294
XM_021572107.2 mRNA downstream 9754 42037274 ~ 42046633 (-) True LOC110496293
XM_036951048.1 mRNA downstream 21172 42028290 ~ 42035215 (-) True LOC110496292
XM_021572102.2 mRNA downstream 42273 42009849 ~ 42014114 (-) False LOC110496289
NM_001124219.1 mRNA upstream 14370 42088179 ~ 42093200 (-) False LOC100135825
XM_036951025.1 mRNA upstream 14370 42088179 ~ 42093200 (-) False LOC100135825
XM_021572112.2 mRNA upstream 31795 42105604 ~ 42132219 (-) False LOC110496298
XM_021572114.2 mRNA upstream 31795 42105604 ~ 42132219 (-) False LOC110496298
XM_021572115.2 mRNA upstream 31795 42105604 ~ 42132219 (-) False LOC110496298
TU1773336 other downstream 384873 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 384873 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1147762 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1370746 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1664504 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 241477 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 285339 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 821222 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 821222 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 821222 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile