RNA id: XM_021572114.2


Basic Information

Item Value
RNA id XM_021572114.2
length 4285
RNA type mRNA
GC content 0.53
exon number 29
gene id LOC110496298
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42105604 ~ 42132219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACTTCCGCTAGGCCACCATGCCCTCCGGAAGTTAGTTTGTTTTATTCGGACACTGTCGAAAGCACCGGAGTGAGACTGAAAGGTGGACTAaccaagtaaaaaaaaacacgGTGTCCGACGAAGACCGTGTAAAAATAGTCTAAACAACTGTCTATTGTTAGAGCCGATCCATTGCTACGAGAAAGCCATTTAGAATTTTCCCCGAACCCTAGTGTCTAACCCCTCAAGTCCTCTGGGGCCAGACGAAGCGAGGCGGGAGGTGATGGAGCCTTCACCGGCAAAGGGGAAACCACAGGGTCGCCTATTGGTGTCCACGACCCTGGACGCAAAAGATGAGCTGGAGGAGCggttggagaggtgtgtggcgaTCGTCACTTCATTGACAAATGGCCTGTCGGAGCGTGAAGCCAACGATGCTATCACAGCTAATGTGTGTAAAGGTCCACAGCAGCACGAGGAGGTGTGTCTGGGACTCTTCGCTCTGCTGCTCACAGAACCCTCACAGGCACAGAGGTGCTACAGAGACCTGACCCTGGTGAATAGGGACGGCATGAACGTGATCCTGATCAAGATCAACCAGATCCTCATGGAGAAGTTCCTCAAGCTGCAAGACGTGTGCCGCACACAGttGGTGTGGTTGGTGAGGGAGCTGGTGAAGAGCGGCGTAATCGGAGCGGACGGCATCCTCATGACCCTTATGAAGCAGATTGCAGGAGGAGACATCACCAATAAGAACCTGTGGCTGGCAGAGAATGTGCTGGACATAGTGGTGGAGCAAAGagAGTGGGTGCTGAAGAGTGGCATGCTGATAGCCATGTCAGTGTACACCTACCTGCGCCTCATCGTGGACCACGGCACCCCGGCACTgctggtcctcagacagaaggagGTGGACTTCTGTATCGGCCTGCTtcgagagaagTTTATGGAGTGTTTTATCATTGGGAGAGACCTGGTGCGTCTGCTGCAGATTGTGGCCCGGATCCCGGAGATGGAGCTGCTGTGGAAAGACCTGCTCCACAACCCCCAGGCCCTGAGCCCTCAGTTCACTGGCTTGCTGCAGCTCCTGACCGCTCGCACATCCCGGAAGTTCTTGGCTTGTCGCCTCACACCAGACATGGAGACCAAACTGCTCTTCATGACCTCcagggtGCGTTTTGGCCAGCAGAAGCGATACCAGGACTGGTTCCAGAGACAATACCTGTCCACGGCAGAGAGCCAGTCGCTGCGCTGCGACCTGATTCGCTACATCTGCGGCGTGGTGCACCCATCCAATGAGGTGTTGAGCTCCGACATCCTGCCCCGCTGGGCTATCATTGGCTGGCTGCTCACCACCTGCACGTCTAACGTGGCGGCCTCCAACGCCAAGCTGGCCCTGTTCTACGACTGGCTCTTCTTCAGCCCAGAGAAGGACAGCATCATGAACATAGagcCGGCCATCTTGGTGATGCACCACTCCATGAAGCCTCATCCAGCCATCACTGCCACTCTCCTGGACTTCATGTGTCGGaTCATCCCTCACTTTTTCCCCCCTCTGGAAGGCCAGGTGCGTCAGGGAGTCTTCAACTCTCTCACCTTCATCATGGAGAAAAGAGTGCTGgcTCACCTAGCCCCACTCTTTGACAACCCCAAACTGGACCGGGAGCTGCGCTCCATGCTGAGGGAACGCTTCCCAGAGTTCTGCAGTTCCCCCTCACCCCCCACAGAGGGAAGGGATGAAGGTACAAATGAAATGAAAATGGAGGAGTCTGTTTCCTTGGAGATGGACAATCATGTGTTGCTGGACAAGGAGGGCGGTTGCTATGACAACACGGAGGCTGCCTTCAGCGACGATGAGGAGGAGATTAACAACAAGGGTGAGGGAAATAAAAAGCGGGAGTTCAGGTTCCACCCAATCAAGGAGGCCATTATTGAGGAGCCCGCTGACATCACTCCCTACGTGGACCAATTGGACGACATGATGAAGGAGAAGGTGTTGCAGTTACAGAAAGGAAGTGACACTGAGACACATTGTGAAGTCATGCAGGAGATCGTGGATCTGATCTTGGAGgagGACTTTGACTCAGAGCAGATGTCAACTCTGGCCTCCTGTCTGGCTGAGCTCTTCAAGGGCCACTTCAGAGGAGACGTGCTTCCCGACGAGATCACAGAAGAGTCGCTGGAGGAGTCTGTGTGTAAGCCTGTGTGCCTGGTGTTCAGGAACCTGTGTCAGATGCAGGAGGACAACAGTGGCTTCTCAGTGCTGCTGGAGATGCTGGCGGAGCTCTACCAGAAACAGCCCAAGATCGGCTACCACCTGCTTTACTACCTCAAGGCCAGTAAAGCGGCGATGGGGAAGATGAGTCTGTATGAGTCTTTTGCCCAGGCCACAGCGCTAGGAGACCTGCACACCTGTCTGATGATGGATATGAAGGCCTGCCAAGAGGACGACATCAGGCTCCTCTGCTATCTCACACCATCCATCTACACTGAGttccCAGATGAGACATTGCGCAGCGCAGAGCTACTCAACATGATTGTAGCTGTCATTGATTCAACACAGcTGCAGGAGCTGATGTGTCATGTGATGATTGGCAATCTGGTGATGTTCCGCAAGGACTCTGTCCTCAATATCCTCATCCAGTCTCTGGATTGGGAGACGTTTGAGCAGTACAGCACCTGGCAGCTCTTCCTGGCCCACAGCATCCCACTGGAGACCATTATCCCCATCCTGCAGCACCTAAAGTACAAAgAACACCCAGAAGCACTCTCCTGTTTGCTGTTGCAACTACGCAGGGAAAAGCCCAGTGGGGAGATGGTGAAGATGGTGCTCAGTCGGCCCTGCCACCCGGAGGACCAGTTCACCACCAGTATCCTGCGCCACTGGGCGGCCAAGCACGACGATGTCCTGGGGGAACACATCAAGGCCCTActcatcaagaacaacaacctgCCACGCAAACGCCAGAGTCTGCGTAGCTCCAGCAGTAAACTGGCCCAGCTGACCCTGGAACAGATCCTGGAGCACATGGACAACCTGAGGCTGAACCTCAGCAACACCAAGAACAgctTCTTCACACAGACACCCATCCTGCAGGCACTGCAGCACGTCCAGGCCAGCTGTGACGAGGCCCACAAGATGAGATTCAGCGACCTGTTTTCATTGGCAGAGGAGTATGAAGAGCCCTCCTCCAAGCCTCCCAAGTCACGGCGCAAGGCCCCCGCTTCCTCTCCGCGGTCGCGTAAGGGAGCGGCCACCCCTGTTAGCAACGAGGAAGAAAGCGCATCCAGCAGTGCCTCGGAGGAAGAGGACTCTAAACCCAAAGCTcccaagaggaagaggaaaggctCATCTGCGGTGGCCTCGGACAGCGACTGAGAGCCCCACAACCAACCTGCTCCCACCTGCCATAGTGACATCCCTGAAGACAGGACCATCAGCCAACCAGCTTCTCCAAACCACAGAGGAAACCCCGCCCCCAAAGACACTCAACAAGAGGGGGTGGGACTCCTCCACGTGGACTCTAATGCTACTGGCCGGAGCCATGGAGacgctcttcctctcctctcactggTCATTGGCTGCTTTGTGTCAGTTGGTCTGGCTGGATTGGTCAGGGGGGGCATTCCAAAGTGCTCGAGAAGCGAGGGGAAATGCCAGTCGCCGTGGCACAGACTGACAGAAATACTGTTACCAGACCATCTGTGTCCTTGAGGAAAGGATTACATGACTAGACTTAGGATGTTTAGGGGGAGTGAACGTGTTGCCCTATTGTCACTTAGTGGTCCGCCTATCACAATGCACTTGGAGACATCAGACCGACAAAGCATTTTATAAGCCATGGCTATGAAGACCGACCAACCAGCAAGACCATCCAGTAAATTTTAACAGAGGCACATGTggaaggttaggtttaggcaatTCATCCCGTTCCTAGAAAGAAAAGTCACCTCTGTCACAATCCCACCCCCTcagaaagaaaacaaagaaaaatCCTTCCTGCATCTGAAAAAAAACTTTAACTATTGGTTGATAAACATACCTGTCGCCTGTTCCTGTTCACTCTTCATTTCTGATTGGCGagaacatggacacacacacacactctctctcattgGATCATTTTAACCACAGATGGTTGGACTGTATGCGAGGTCAGAAATAAAGACTGTATGAATGGACGAGCCAGAAGTAGTCGCTGAACTTTTTAATGGAAATGTCTTTCTACTGAACTATTTTCATAAAAAAGGTCATAACTATGTTAAATGATTATgatattaataaaaaaaaaagggcTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773548 lncRNA downstream 1064 42103892 ~ 42104540 (-) True G1549996
TU1773549 lncRNA downstream 2702 42102448 ~ 42102902 (-) True G1549997
TU1773542 lncRNA downstream 16424 42088235 ~ 42089180 (-) True LOC100135825
TU1773573 lncRNA downstream 112498 41992853 ~ 41993106 (-) True G1550020
TU1773558 lncRNA downstream 132837 41972538 ~ 41972767 (-) True G1550006
TU1773636 lncRNA upstream 36847 42169066 ~ 42169326 (-) True G1550073
TU1773667 lncRNA upstream 59643 42191862 ~ 42192144 (-) True G1550104
TU1773728 lncRNA upstream 138061 42270280 ~ 42270895 (-) True G1550157
TU1773712 lncRNA upstream 147430 42279649 ~ 42279987 (-) True LOC110496299
TU1773692 lncRNA upstream 157646 42289865 ~ 42291075 (-) True G1550124
NM_001124219.1 mRNA downstream 12404 42088179 ~ 42093200 (-) False LOC100135825
XM_036951025.1 mRNA downstream 12404 42088179 ~ 42093200 (-) False LOC100135825
XM_021572109.2 mRNA downstream 30172 42056387 ~ 42075432 (-) True LOC110496296
XM_036952861.1 mRNA downstream 31795 42056387 ~ 42073809 (-) False LOC110496296
XR_005037487.1 mRNA downstream 49425 42048101 ~ 42056179 (-) True LOC110496294
XM_036952863.1 mRNA upstream 12939 42145158 ~ 42268084 (-) False LOC110496297
XM_036952864.1 mRNA upstream 12939 42145158 ~ 42268090 (-) True LOC110496297
XM_036952865.1 mRNA upstream 147306 42279525 ~ 42286269 (-) False LOC110496299
XM_021572118.2 mRNA upstream 147306 42279525 ~ 42286932 (-) False LOC110496299
XM_036952868.1 mRNA upstream 159448 42291667 ~ 42297509 (-) False LOC110496300
TU1773336 other downstream 434090 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 434090 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1196979 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1419963 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1713721 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 183067 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 226929 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 762812 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 762812 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 762812 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile