RNA id: XM_036952863.1


Basic Information

Item Value
RNA id XM_036952863.1
length 6975
RNA type mRNA
GC content 0.48
exon number 23
gene id LOC110496297
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42145158 ~ 42268090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgccgcacacacacacaccggttaCCCTTGTGACCGGAGCTCCCCAGTGCTTGCGTATTCATCTGCGCGAGTGAGAGATCGATCCTTGTGTGCTGCTGTGTGATTGAGTTGAGTTCAATGTTGGCGATGTGCGGAGGGAGGAAACCACCGCACTCACCTCAAAGAATGACAAGCTCGGTTCATCGGACGTCTTCGATTAACTTTGGATGTTTAGCTGATGTCGACTTTTTAGCTTTTTCTTCAATGGAATCAACAAGAGACTAGTAAAATCGCAGCCTTCACATGAACAGCAAAACAATGTGTTGGAATTTAGTCTAAGAAGCAGCGGCTTCAGATTCTAAATAACGAACGTGATAGACATTAAGATAAGACAGTTGCTGGGAGTCACCGGGAGACCTTCTACCAAGAAACTCGATAGGCTGTCCAGAGACAATCTGTGGAAGAGATACACAAAATGGCGAGACATAACCATCGATATTGAGCCCCCCTGTGGTTGATGGTGATGCCTGAGCCCAACCCAGCAATGCAGAAGACGAGAACTCGGTGGTGGCAGGGACGACTGGGAGTTCCTCTGCTGTTTCTGGTTTTCCCGCTCCTCAGGACCGAACCGCTCCAACTCGAGCTGTCGTTCAATGGACTTTCGGAGCCCCAGAATGTGACACTGGCTGCTATCCTGCCTTTGCACAACACTGAATACCCGTGGGCCTGGCCTCGCGTGGGACCCGCTCTGATCAGAGCTCTGGAGCGAGTCAATGACGAACCCACCCTGCTGCCGGGCCACCGCCTCCGCATCGTCTACGACAGCAGCGAAAGCAAAGATGGAGTCTGCTCCGACTCAGTGGCGCCGTTGGTGGCCGTGGACCTCAAGTTCTCCTACGACCCGTGGGCCTTCATCGGGCCTGGCTGCGACTACGCTTCGTCTCCTGTGGGCCGCTTCACCACCCACTGGGACGTTCCCATGGTGACGGCCGGGGCAGCGGCCATCGGCTTCAACATGTACACATCCATCACCAACACGGGCCCCACACACAAGAAGCTGGGCGAGTTTGGGGTGCGCCTGCATCGCCATTTTGGCTGGCACAGGCACGCCATGCTCATGTTCAGCGACAACAAAGACGACGACCGGCCATACTACTTTACGGCAGAGGGGCTGTACACGCAGCTGCAGCTGGACAACATCACCACAGCAGACAAGGTCTTCAATGAGCAGACTGGACCCGTCCAGTATGATGACCTCATCAGTGATATAAGCCAGAGTGCCCGAGTGGTGTACATGTGCTGCTCATGGGACACTTTCCGGAGGCTGATGGTACAGTTCTGGAGGGAAGGCCTGCCCCCGGAGGACTATGCCTTCTTCTTCATTGACCTGTTCGGCCACAGCCTGAGGAAGCAGCCCGCTAGGCCCTGGTACAGAGGAGACTCAGAAGATCACGCCGCCAAGAAGGCCTTCAGGAGTGTGAAGATCCTGACCTACAAAGAGCCACAGAACCCAGAGTACAAGGAGTTTGTTTCCAACCTGAAGACGGACGCCATGAACATGTTCAACTTCACCGTAGAAGACTCGCTGatGAACCTGATAGCAGGAGGATTCTATGACGGCGTGATGCTTTACTCTCAGGCCCTGAATGAGACCATGACAGAGGCAGGGGGCCGGCCGCGAGGGGACACCGTCACCAAGAGGATGTGGAATCGCACGTACCATGGTGTTACTGGCTTGGTTCAGATTGATGGGGCAGGCGATCGGGAGATTGACTTTGCCTTGTGGGACATGACTGATCTTGACTCTGGGGTCTTTCAGATCGTGTCCGTCTACAACAGCAGCCTGAAGGAGCTGGTTCCAGTGCCGGGCATGAAGGTCCAGTGGCCGGGGGGCGCCCCCCCTCAAGACATCCCCGACTGTGGCTTCAAGAACGACAAGCCCGCTTGCTTAGCACGGACAGTCACTATGCACCAGATGGTGGCCATCGTGGCTTGCTTCATCTTCGTCATCATCGTCACTGTCACCGTCTTCATCTACAGGAAGCTGAAATTGGAGAATGAGTTGGCTGCTCAGCTCTGGCGAGTGCAATGGGAAGACGTGCAGATGAGTGACCTGGAGAAAGTGCTGCGCAGGGCCTGCAGCAGACTCACCCTGTCTCTGAGAGGCTCCAACTATGGCTCCTTCCTGACCATGGAAGGAAACTTCCAGATCTACGCCAAAACTGGCTACTACAAGGGAAACATTTCGGCCATTAAGTATGTCACTAACAAGAAGCGCATCGAGCTCACCAGGAGGGTGCTCTTTGAGCTCAAACATATGCGTGATGTTCAAAACGAGCACTTGACTCGCTTTATCGGAGCCTGTATCGATCCTCCTAACATCTGTATCATCACAGAGTACTGTCCCCGGGGCAGCCTGCAGGATCTTATGGAGAGCGAGACCATCACTTTGGACTGGATGTTCAGATACTCTCTGATCAACGACATTGTTAAGGGAATggccttccttcacaacagcgtCATCGTTTCCCATGGTAACCTGAAGTCCTCTAACTGCGTGGTGGACAGTCGCTTTgtcctgaagatcactgactacGGGCTGGCTAGCTTCCGCGAAAAGTCCAATATGGAGGACACACACGCCTACTATGCCCgGAAATTGTGGGCAGCTCCAGAGCTACTGAGGGCAGATAGTCCCCCGCCATGTGGCACACAGAAAGGTGACATCTACAGCTTCGGCATCATTCTGCAAGAGCTGGCCCTGCTCCGAGGGGTCTTCCACGTCGAGGGGGACACCCTCAGCcccaaagAAATCGTAGAGCGCGTGGCGCTGGGCCAGTGGCCCTACCTGCggccctccctctgcccccagagTCACAGTGAAGAGGTGGGCCAGCTCATGCAGCGCTGCTGGAGCGAGGACGTGAACGAGAGGCCCGAGTTCCACCACATCAAACTGCTGCTGCGCAAACACAACAGAGGTTATGGGTCTAATATCCTGGACAACCTGCTGTCTCGGATGGAGCAGTACGCCAATAACCTGGAAGAACTGGTGGAGGAAAGGACACAGGCTTACCATGAAGAGAAACGCAAGGCCGAGGCACTGCTCTACCAGATACTTCCACACTCTGTAGCGGAGCAGCTGAAGAGAGGGGAGACGGTGCAGGCTGAGGCCTTTGACTCGGTCACCATCTACTTCAGTGACATTGTGGGCTTCACCGCCATCTCAGCAGAGAGCACGCCCATGCAGGTGGTGACCCTATTGAATGACCTCTACACGTGTTTCGATGCCATCATCGACAACTTCGATGTTTATAAGGTGGAGACGATAGGCGATGCATACATGGTGGTGTCTGGGCTGCCCGTGAGGAACGGCAATCTGCACGGACGAGAGATCGCCCGCATGTCGCTAGCCCTGCTGGAGGCCGTACACTCCTTCAGAATCCGCCACCGACCTGCCCAGCAGCTCTTTCTGCGCAGTGGCATCCACAGTGgCCCAGTGTGTGCTGGTGTTGTAGGACTGAAGATGCCTCGGTTCTGTCTGTTTGGAGACACAGTCAACACAGCCTCTCGCATGGAGTCCAATGGGGAGGCCCTGAAGATCCACGTGTCGGAGGCCACGCGCACGGTGCTGGACGACTTCAACTGTTTCCAGCTGGAGCTGAGAGGAGACGTGGAGATGAAGGGCAAAGGGAGGATGAAGACCTACTGGCTACTGGGAGAGAGCACCAGCAACATGgcttactagagagagagagagagagagagatagagagaagagggagagcgagagaaagagagagagaagggggagagcgagagaaagagagagacggggagagcgagagaaagagagagagacacacacgggagagagagagatgcatactGTTCAGACCGTATTAGAGAGACGTGGTAGAAAAGAGATGTAAGGGAAGGGAGGGCTGAGGTAAAAGGAAAAGACATGCATACAGATGCACATGGGAATGGAGTGAAATGGAaataagcaacaacaaaaaactgtacCACTGACAACTCCCTTCTTAATGATAGTCTCATCGACAGAGTCTCACTGCTCTTCATGGGGATACCTTGGTTCCTATAGGTGGACAAGCCCTGTCTAGATTGACTTACCATGGTGGATCATCCATGGACAGCTGTAGACTTGTAGACTTTCCAACCAAAGGAACGATATCACTGCTACACCGCCATGTGCCGATTGGCGAGGCACCACCTCTGATTGACACAGGCGATGGGCATTTGCGAACGACGCCACTCTGTGTTCCAGAGTTGTAACTCGATATTTGTGAACAAACATTTTGGACATTCTTGTTTGGACCTGTTGTTTGTGGTGACGAGAGTTGTCCAATGTGCTATTTTGTGGTTATTTGACTTTGTGACTGACTTGGTGTTCTCTAACATTTGTGTAGAGTCCTTAGTGTTATGTGAAGCATTCCCTGGTGTTTTCTATTTATTTCACAAGTGGTTTGTGTTCTATATTACTATATCAGTTTGTTCTATATCAGTCAAACATGAATCAACTGAAGTCCAGAGGGGTACACTACGAATGTAGCTAGATGTATTCAGTATTTTCTGATATTAGCTAGCTTCAGTCAGCTTCACGTATGTTATGAAGGCAGATCAGGCAGATGTTGATCGTTCACTCGCCGCTTACTTGAGCCTGCTCGAGCCGGGCTTGTAACTGCACGTACATGTCACACATTGCTAGTCGAAAGCCAAACTGAGACGATACTGAAACATTAGTCCATGCGCGAGTCAGTGACACATTTTCATTTTTGCCAAAATCTAAATGAAAGGAAAAACTAACCTGCAAATACAGCAGGCTATGGTGTGAAATGGGCTATTACAAGTGCCGTCTGTCTTGCGCATATTGTTTATTTGGTGTGCTTAGCAATGCACGATGACTCCCCACTCATATAGATAAAATCATTGTATGAATTCCTACGACAGTTTTACTGCCCGTGAAGTTTCAAATGCATCCCGTCGTTACTAAATGTGTTGTGTGTAATGTATTTGAATGTTACTATTTATAACACACAGGTTTGACTCAACCACTTCATTCGGGATAAATTGAGTAAAACACTGAGTTGGCCATCCCGGGAGCAGAttagttctgaaggattcgttgccacagaaatgtacctggctaaaaggtgagccacaTTTGTGTCACCGTttgaactcagagttgaccaaagGTTCCTCGCTAACTCCTCAAACCAGATTCGTGGAATAGGGCTCGGTAATCCATAATAATACGAGTCAACAAAGTGTGTCCCACAACCTAGTAGGCTATGTGCTTTAGGGGGAAGTAGTGGAGGCAATCACCACCATGCAAGTATAGGCGATCTAATTGACATTGGTGAAATGTCTCAAATGGACACTTATGGCTGTTAAGGACATTGTGCTTGTAAATAAGTCCGTGTGCATTCAACAGGACTGTTCAAAAAGAGATTTTACAGCCAAAACGAATATTTTTGgtcataaaaaaaactatttgcgTTAATCTTCTCAAGATAAACTGCGATGACAATGAAGAATTGAGAATTAGAGTTGGCCACGAATGTCAACTTTTGGGTGAATTAAGTATTACTATCTAGTCACAGGTAATGCTGTCTGCATGGTTATAACCAGCTAGTCCTCTCACACGAAGTTCTTATATTACAGACTCATTTTGAAGTTCAGATTTTCTAATTGTCCTTTTTCCTTCTTTCTTTTTTACACGATGATGTTATACTCAAGGGTACAAAAGAATGAGCGAGTCTAGCTCTTCACTTCTGTTACTGATAAGAAAGGTCAGATTTATTGCAGATTGGGAGTCCTTCTAAATGGCATACATAGCATAGTGAAAAATTATATATTGGATATATGCCCATAAACTCTCAAAGTTGACTCTCTGAGGATACAGGTTTGGCTTGTGATTTGCAAACATGCTACAACAAACGAGTCTTTTGCTTTTTGTTCGTTGGTGTTTTTGGGTGGCTCTGCTTGTTGTCTATCTGAAAGGAACAGCTCGCTACTTGGCTCAGAAGTGGAGCATCACTGATAGGCAGCAGGCACCCATATACCAACCAGCGCTATGGACCATGTGAATGTGCTCTCACTTGAATGGCCCTAAACCTTAAACTTATCATCAGTGAGAATATCCCCTTTCCAACTTAAGTCTAAatgatttgatcatttcattttcCATGAGTGAATGTATCACCTAAGTCAAAGCCAATACTGTGAAATAATCAGGATTGGTAATGTGGAGTTGTAAATGATAACAGCTCTGTGTGATGTCAGGGAGACACGTCATTCATCAGTAGTAACTCACCCAATGTCAGGCTTGATCTGACAGGTAACCCAGCGGGCAAAACTGGTTTCAGTATAATCTATTTTATGGCGTCGTAGTCAGGTTGTATACTGGTGGTGTGAAAGTTTATGCAGAAGTTAATTATTTTTAGCAAACAGAAAATCAAGTCTTTGTCTAGTTGTAATCTGACCAGATAACAACCAAAATATGACGTCTTTCCCATTATGTCTTCTTGTCGTGAAAAATGTGTCTTTACCTGGTTGTAACAAGCAATTGGTTGAGACCAGAAACTGGTTGAGACCAGTTGCTTGTAATGTGGTTGTATGATTTCTTGTCAACCAGAAAACCTTTTTACAACCAGAAAATGACATCATTAAGATAATTCCAAGGCAGGTCCATCTGCATACGGTATGTGTCCACTATGAATGTGGTCACATGGCTTCTTTAAATGTGTTTCTGATGCAgtaaaatgtattgtattgtgttgttttggtTGCCGTGTCTGTATTTTCAAAGAGTGGGTTGGTCTTTGAATTACTGTATGTTACAATGTACTGTTGTGTTTTAAAATATGACATTGGCGTTGTTTTGGGGGGAGAAAGAAATGTTCAGTTACATTGCCTGTCTTGTTTCGGGTCAGTTGAATGTCTTTATAAAATCAGTTGATAACCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773548 lncRNA downstream 40618 42103892 ~ 42104540 (-) True G1549996
TU1773549 lncRNA downstream 42256 42102448 ~ 42102902 (-) True G1549997
TU1773542 lncRNA downstream 55978 42088235 ~ 42089180 (-) True LOC100135825
TU1773573 lncRNA downstream 152052 41992853 ~ 41993106 (-) True G1550020
TU1773558 lncRNA downstream 172391 41972538 ~ 41972767 (-) True G1550006
TU1773728 lncRNA upstream 2196 42270280 ~ 42270895 (-) True G1550157
TU1773712 lncRNA upstream 11565 42279649 ~ 42279987 (-) True LOC110496299
TU1773692 lncRNA upstream 21781 42289865 ~ 42291075 (-) True G1550124
TU1773741 lncRNA upstream 39393 42307477 ~ 42307699 (-) True G1550170
TU1773746 lncRNA upstream 45667 42313751 ~ 42314044 (-) True G1550175
XM_021572112.2 mRNA downstream 12939 42105604 ~ 42132219 (-) False LOC110496298
XM_021572114.2 mRNA downstream 12939 42105604 ~ 42132219 (-) False LOC110496298
XM_021572115.2 mRNA downstream 12939 42105604 ~ 42132219 (-) False LOC110496298
XM_021572116.2 mRNA downstream 12939 42105604 ~ 42132219 (-) False LOC110496298
XM_021572117.2 mRNA downstream 12939 42105604 ~ 42132219 (-) False LOC110496298
XM_036952865.1 mRNA upstream 11441 42279525 ~ 42286269 (-) False LOC110496299
XM_021572118.2 mRNA upstream 11441 42279525 ~ 42286932 (-) False LOC110496299
XM_036952868.1 mRNA upstream 23583 42291667 ~ 42297509 (-) False LOC110496300
XM_036952867.1 mRNA upstream 23583 42291667 ~ 42297516 (-) False LOC110496300
XR_005037488.1 mRNA upstream 23583 42291667 ~ 42297516 (-) False LOC110496300
TU1773336 other downstream 473644 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 473644 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1236533 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1459517 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1753275 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 47202 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 91064 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 626947 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 626947 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 626947 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile