RNA id: XM_021572119.2


Basic Information

Item Value
RNA id XM_021572119.2
length 2189
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110496300
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42291667 ~ 42297772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTAGCAAGCACAATTGAAGTTGAAGCAAAAATCTTGCCAGCTACCCACCTCACTGAGTGCACATGAAGATCAAGCTGCTGGACAGCTGGTTTCAAGAGGCCAAGCAGTCCCTCTGCAATTGCATCTTTCCCTGAGGGAGTCTCCACAACAGCTAGGGCAGCCATTCCTCTTCCAGAACCAGAAGTGATAACAAGAAACGCAAAGCACGCCAGGAAGTAGCTTTGTGACGTAGCTGTAAAGCCTCTCCATTTTCCGTCGTCAGAGTTCCAGTGAAGTCAAAATGAGTGCTCCCTCCTCCCAAAAAGTTGTGCTGAAAAGCACCACCAAGCAGTCCCTGAATGAGCGCTTCACTACCATGCTGAAGAACAAGGCGCCGACAGCGGTGAGTGTACGAGCTACCATGCAGCAGCAACACATGGCCAGTGCCCGCAACCGCCGCCTCGCCCAGCAAATGGAGAACAGGCCCTCTGTGCAGGCTGCTCTGCACCACAAGCAGAGCCTGAAGCAGCGCCTGGGGAAGAGCAACATCCAGGCCAGGCTGGGCCGGCCCATCGGGGCCTTGATGCGGGGGGGTGCTGGCGGCCGGGGATTCGCTGTTGGAGGGATGCGGGGGATGACGAGAGGAGGCCTGCGAGGTCGCGGCAGAGGAGCCCTGAGGGGCGCTATGGCTCTGAGAGGGAATCGCCTTTCCCCAGGCATGGGCCAGATGCGTGGCAGAGGGGGTCCAGGCCGTGTGGCCCTCCGTAGAGGGATGCGTCAAAGAGGTGGTCGTGGAGGTGCCTTTGGCAGAGGAGCTGGAAGAGGAGTGGGAGCCAGGGGACGAGGTGGTCTGCGTGGGCGTGGTGGCTTCGCTGGCAGGGGTGGTGGCCGCGGTCGCGGGGGTGGAAGAGGAGGCCGCGGCAGGGGAGGTGGCCCAGGAATGACCCGCGAGCAGCTGGACAACCAGCTTGACGCCTATATGTCCAAGACCAAGGGCAACCTGGACGCTGAGCTGGACGCGTACATGGCCCAGGCTGACCCAGAGGGCATGGAGTGAACAAGGACCTCCACCGCGAGCGTAGGGACTCCTTCAATAGGCCCACACTGAGACAGTGCTGATAACATGAAAGACGCAGAGAGAAGCTTGTATAGTACTATTACACCAAACAAATGTAATGATAAATGCACTTACGTAAACTCTGTGCACTGTCTCACATTACATGGATAAAATTTGTGATGTGATCACAACCTCTGCTTGAATATAAAACTCACATTCACTGAcgcacatgcatacaaacacacttGTTCTAAAATTGTGGGCCTATGAAGAGAACTGTTCGAAATTGAACTTTTTCCTGAATGTGGACTTGACCATTCTATCAGTATCAGTACAAAGTAGACTCGCACCGGCACAGTTTGAAACCTTTTTCCTGTGTGTGCATGAAGAATGCAAAGATCTTTTAAACTTGAATGGACGACACTGACCGGAGTAGACTTAAAGAACCAACATCATCAACGCTCCTGAAATGCCTGCTTTTTGGACCAGAATCTCTTGGCAGAATCTGTTTTGAAGCTGAATTGGGACTATTACCGAACTTTGTGTCTATGTCCATATGGTTAAAAGTGCTTTAGCTCCATCATGTCTAACTAGCATCCACTTCTTATATTTCGTAAACCTATTTTTTACTGCCATGTTTTTATGTTAGGATTTGTATTTAGTAGTGGATGCTCCTTTTACTGTGTTAGCAGAAGTGTACAAGGACGTGACTCTCGGGTAGAAAAATCAAATGAAAATTACAAGGGGAATTCTAGAAAAATCTTGTGTTTTTATTCTATTTAACGCCACCATCTTAAGCTTTGCTTCTGGAGAATTTAAATATGTTGCTGTCTTTGGTTGAAACTCCCCTAACAGCATTTTATGGATGCTTGTCATACCAAATAAGCAACTACACGAGATGCTAAATATTTCAATCCAAGTTGCAAAGGTGTGCGAGtggtctcttcctccccccctggTGTCAATTGTAAGAATTTGAGATGGTCTATAAAAAAACGGGTTGTTGTACACCACTCATAAAGTGAGTGAAAATGTTTTCAGATTGTGTCCAACTGGATGAAACTAAACTCCAAATGCTATGTAATTCCCTCTCCTTCCAACTGGTTATTGTCATAGAATAGAGAATAAACGTTCATCTTCTTTTAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773692 lncRNA downstream 592 42289865 ~ 42291075 (-) True G1550124
TU1773712 lncRNA downstream 11680 42279649 ~ 42279987 (-) True LOC110496299
TU1773728 lncRNA downstream 20772 42270280 ~ 42270895 (-) True G1550157
TU1773667 lncRNA downstream 99523 42191862 ~ 42192144 (-) True G1550104
TU1773636 lncRNA downstream 122341 42169066 ~ 42169326 (-) True G1550073
TU1773741 lncRNA upstream 9705 42307477 ~ 42307699 (-) True G1550170
TU1773746 lncRNA upstream 15979 42313751 ~ 42314044 (-) True G1550175
TU1773749 lncRNA upstream 20026 42317798 ~ 42318049 (-) True G1550178
TU1773752 lncRNA upstream 24899 42322671 ~ 42323020 (-) True G1550181
TU1773753 lncRNA upstream 29666 42327438 ~ 42327775 (-) True G1550182
XM_021572118.2 mRNA downstream 4735 42279525 ~ 42286932 (-) False LOC110496299
XM_036952865.1 mRNA downstream 5398 42279525 ~ 42286269 (-) False LOC110496299
XM_036952864.1 mRNA downstream 23577 42145158 ~ 42268090 (-) True LOC110496297
XM_036952863.1 mRNA downstream 23583 42145158 ~ 42268084 (-) False LOC110496297
XM_036952862.1 mRNA downstream 159448 42105604 ~ 42132219 (-) True LOC110496298
XM_021570531.2 mRNA upstream 142573 42440345 ~ 42451777 (-) False stom
NM_001124593.1 mRNA upstream 142853 42440625 ~ 42451547 (-) True stom
XM_021572128.2 mRNA upstream 241555 42539327 ~ 42542965 (-) True LOC110496307
XM_021572130.2 mRNA upstream 257952 42555724 ~ 42565134 (-) False LOC110496309
XM_021572131.2 mRNA upstream 257952 42555724 ~ 42565137 (-) False LOC110496309
TU1773336 other downstream 620153 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 620153 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1383042 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1606026 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1899784 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 17514 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 61376 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 597259 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 597259 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 597259 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile