RNA id: XM_021570531.2


Basic Information

Item Value
RNA id XM_021570531.2
length 1758
RNA type mRNA
GC content 0.48
exon number 8
gene id stom
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42440345 ~ 42451777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAGAGGAcacgaggagtatgcaattgagatttgGTTAGGACTATTTGGTATCCTTGGGATGTTCCTACCCTAAACCATTACCATTTAAAATGTCAATTTCAATggggtagggacatcccaaggaccTTGAATAGCACGGACCATTGAGATtttcccacagacacacctctatTCCCTTCCCTGATGGACAGATAGTGTAGTCGTCGTGCTGTCATTCAGTCTGTGACctgttgtaacaatgtgttaCCTGGTTCTATTCATTCTCCTCTGCTCTGGAACTCTCCTGTCTATAACGCTCATAGACTACTACCAACACCAAAGaGTGGACATTGCCCTGTTCTCTCAGGATGTGAGAGAGCTGATGGACTGTCCTTGGAGACTCAACCTCACACACAGAGAACTAtacaggaCAGAGTTGTGGTCGTGCTGTAATGCGTCTGATAGGCTGATGGTGACCAGACAGAACACCAATCTGAACCAGAGTCTGTCCTACGAGATACACAGGTGGAAGAAGAGAAAGGTGGATCAAGCACTATGGGAGATGCTGCCTCagaccgTACCCTGGAGTAAAGGTTCGTTGAGTCGTTGTGCCGTGGTGGGAAGTGGAGGAATCCTGCAGAACAGCAGCTGTGGAGCGGAAATAGACAATGCTGACTATGTCATCAGgTTTAACCTGGCTCCTATCAACAAGAGTTGTGACGTGGGAGTGAAAACAGACCTCGTAACAGCCAACCCTAGCCAGATCATTAAAGGgTACACTGACCTCCAGCAGAACCCTGGACACCTGGCAGAAGTCCTGTCATTCTATGGCCACGCCCATCTGCTTCTCCCCGCCTTCTCGTCTGCCTCTGGGACAGCCCCCTGCTTCAAGGTGTACCATGCCCTCCGTAAGGCCCGCCCCCAACAAGAAGTGGTGTTCTTCCACCCAGACTACCTGTTTGAGCTGGGCAGGTTCTGGCGTCACCGTGGGCAGCGAGCCCGACGGCTCTCTACTGGTCTGATGCTGGCCAGCACTGCTTTGGAGATCtgtgaacagGTTCATCTGTACGGCTTCTGGCCCTTCCCTCTGGATCTATCCCACAATTCTTTGCCCCATCATTACTATGACAACGTGGGTCCGAACCGCAAAATGCACGCAATGCCTGAAGAGTTCCTGCTGTTACTACAACTCCACAGCCAGGGGGCGCTACAGCTACATGTTGGACCCTGTACActgacccctacaccctaacctatACAACCTTAGTTACTACAATTCCACAACCAGGGGGCGCTACAGCTACATCCCTGTTGATAGCCCCTTGTGCAGGGCTAGGCAACAGAAGCCTACCACACTGACTTGTATTCACACCCTGATCCCTCAGTCTCTGTGGTGAGACAATACTGTGAACATGATTTGAGATTGAATTTGGACCACAACTTAATAGAGCTAACAGTTTAGAACACGACCTAATTCAGCGTTACCCAAACTTGGCCCTGGGGACctcaaggggtgcacattttggtttttgccctggcactacacagctgatttaaaaataatcaactcatcatcaagctttgattattttaatcagctgtgcACCTCATGAGATACCCaagactgagtttgggaaacgctgactTAACTGTTTTAGAACTAAAAATACCAAATAGTTTGGAACCTGACCTAAATCATGACTGGTCAATTGTTGTTCCTTTACCAGTTTGTTTTGTGTTTCCAGATAAATGTCAGAataaagagatgaagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773824 lncRNA downstream 16589 42421247 ~ 42423756 (-) True G1550245
TU1773808 lncRNA downstream 30844 42408800 ~ 42409501 (-) True G1550231
TU1773778 lncRNA downstream 82308 42357725 ~ 42358037 (-) True G1550201
TU1773777 lncRNA downstream 83685 42356386 ~ 42356660 (-) True G1550200
TU1773769 lncRNA downstream 90140 42349978 ~ 42350205 (-) True G1550198
TU1773810 lncRNA upstream 31817 42483594 ~ 42488418 (-) True G1550233
TU1773811 lncRNA upstream 48009 42499786 ~ 42501294 (-) True G1550234
TU1773874 lncRNA upstream 51509 42503286 ~ 42506557 (-) True G1550288
TU1773875 lncRNA upstream 56818 42508595 ~ 42508853 (-) True G1550289
TU1773982 lncRNA upstream 129460 42581237 ~ 42588502 (-) True LOC110496309
XM_021572119.2 mRNA downstream 142573 42291667 ~ 42297772 (-) True LOC110496300
XM_036952867.1 mRNA downstream 142829 42291667 ~ 42297516 (-) False LOC110496300
XR_005037488.1 mRNA downstream 142829 42291667 ~ 42297516 (-) False LOC110496300
XM_036952868.1 mRNA downstream 142836 42291667 ~ 42297509 (-) False LOC110496300
XM_021572118.2 mRNA downstream 153413 42279525 ~ 42286932 (-) False LOC110496299
XM_021572128.2 mRNA upstream 87550 42539327 ~ 42542965 (-) True LOC110496307
XM_021572130.2 mRNA upstream 103947 42555724 ~ 42565134 (-) False LOC110496309
XM_021572131.2 mRNA upstream 103947 42555724 ~ 42565137 (-) False LOC110496309
XM_036952886.1 mRNA upstream 103947 42555724 ~ 42565138 (-) False LOC110496309
XM_021572132.2 mRNA upstream 103947 42555724 ~ 42588918 (-) False LOC110496309
TU1773779 other downstream 80717 42359148 ~ 42359628 (-) True G1550202
TU1773748 other downstream 124266 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 768831 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 768831 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1531720 40905687 ~ 40908625 (-) True LOC118941164
TU1774432 other upstream 443254 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 443254 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 443254 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 443254 42895031 ~ 42929252 (-) False LOC118936491
TU1774433 other upstream 466481 42918258 ~ 42929452 (-) False LOC118936491

Expression Profile