RNA id: XM_021572128.2


Basic Information

Item Value
RNA id XM_021572128.2
length 3085
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110496307
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42539327 ~ 42542965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcttacaagctcttaaccaacaatgcagttaagtaagcgtttcactgtaaggtcaacacctgttgtattcggcgcgtgtgacaaatacaatttgatttgattcagatCTGGCCACTCCAGAACAGTCCAGCGTTTCTTCTTGAACCATTCCAGGGTGCCTTTGATATTTGTttggggttgttgtcctgctgaaattgCCATCAACCTTCCAACCGAGACCAAGTGTTTGGACACTGGGTTGAACATTGCACTCCAAAACACCTTCATAATCTGCTGTTTTGCTTATGTACAAGGCCCCAAGCACcagaggcagcaaagcaaccccacagcaTTATCAAACCTTCCCTATGTGTGTAGTTATTTTCTTAATTTGGTTGTTGGTTAACATAGGAAGCCCCCACTGCCGAAGAAGACTCAAGAAAGCCTGATTGAATGCTGGACTGTAGTGGAGTGGCCAGCCAATATTCCAGATCTAAATCCCATCCAAAACCTATGGTAAGAGCTGAAAATAGCAGTTGGAAGAATAAGAGCAGTTTGCTGTGAAGTGGGACAAGTTGCCAGTAGGAAGGTGCAGCAAGCTCATTGATGGTACAAGAAGTGTTTGTCTGCAGTTGGCCAAAGGCTGTAATTTTGTCTGCCAATTGTTTTTCTTTTCTAAATTAGTAGTTTGCAAAAATACAATGGGTTCTAGAATGTTGCAAATCCAAGGTCTGGAGACGAAGTTCTCAATTTCAAACTATTTTTTGAAGAAATGGGGAATTAATTGAGAAGTGCAAGCGTGCCAACTAGTTTGTTACAAAGTTGATTTTTACACGAGGGATAAACAATGTTGCACATGGTTTGGCTTTTGGGGTTTAATTCACCTTTTTGTCTATTTACAATAAATACTTATGTGCATCTTATCTCTATGATTTTGTCATAACTCTGTGAAAATCTTACTGGGCACTACTCAAACAGGACCATGGTAAAGTAGAAATGTCCATAATATTACCACCAGCAGGTGGCATTGGTCATCAGTGTATTGACAATGCATAATGTTGGTTCCCCCATCATGTAGGTTCAAAAAGCTCTATACGTCTTTGTTCTTATGTCTACGGGGTGGGATAACTATTAATTGCAGGTTATTTTAGCATCTACACGCAGTTTTTGCCTTTTTGGTATAGATTGTTCTGTTAATCCCAAAATGATGCTTAATTAATTTGTGTCCATTTAATAACTAAACTCCAAAAACAATGGTGAAGATAAAATCGATACGTTTGAAGGTTAGTAATGTACGTCGTTGAGACGAAGCGCGTTGGCCGCAGACAGGCGCACAGTCCTCATTGGCCCATACTTTTTGTCCATCAGCGAACAGGGCCCGCTTATCCTTTATAAATTGCTAGACCGCACAATCCGAGGGAGTTTACTTTGTGTATCCTACACGTTGAGCAGAGCCACGGAAACCGCTGCGCCCTTTTAACAAATGGTTGTCCAAGTAAACCAGCCAACTCGCCACTACAGCAAAACGATGGAAGGAAGTCAGCAAAAGGTGGAGGCTAATGTCTTACTACTTGGTGCTGAAAGCGTCGGTAAATCTGCTCTCACGGTGCGGTTTCTCACTAGAAGGTTTATCGGCGAATACGGCGATATTGAATCTATCTACAGTCACACTGACCGAATAGAAGGACGGGAGATCAGCTTTAATATCTGGGATTCGCTTTGCCCCCAGAATGGTGAGGTCGAGGGACACATCAGCGACAGACAACTCCAGTGGGCGGATGGTTTCATTCTGGTTTATAGCATATGTGACCGTGCCAGCTTCAACGTGGTGCGGCAACAGGTGCAGCGCATCCAGCAAGCCAAAAGCAAGTTCCCCGGAGCCCATCCCATCATTATCGTGGGCAATAAACGTGACCTCCAGCATCGCCGCACTGTCTCAAGCGAGGAAGGACGCCTCCTCGCTCTTTCCACGGACTGTGGCTTCTTTGAGATCTCTGTAGCGGAAACATACCACGAGGTACAACTGGTATTTCACGAACTGCTCGACCTTATCCGAGAGGCGAGGGCGCTCAAGAAGGGGGCAGCTGGGATCAAGGGTATTGTGAGAAGCATGTCCGCCGTTTTCGGAAGGAAGAGGACTGAGTAGTTCCAATATAGCTGAATACGAGAGACGTTGAGGTGTTACTGTAGTTCTGCATCTAAACAGCCCAGGACTTGTCCGTGCATAAAAAGGATGGTTATGTTTCCATATTGGAATAGGTCCATGCACAGCTCTATGATTTAGGCCTAACTGAACTCAAGCCGGTTGGATTGTTACTCGAATGAGATGATTGACAATCAAATCCTATCAAACTGACAGGATTAAGTACTCTTATTTGTGTCGGAGGTCAGGTGGCCTAAAGTAGCAGAAAAATGCCCTTAAATTGCCAACTTGTTAGATTGCCTTGCAACATGAGATACAATTGCCAACTGTAAAGCAGAAGGGTTCTTGTTTAAATTCCTGGAAGAAGTATTGTGGAGAATCTATGTGCAATAGACAACTTATTTCTCTTCACAAATCTGTATCAGCATGCAGAATGTTCTACAGGTGAGGTCTGCTTGGTCTTATCATTGGCACAATCCCTTGGACTATTGACAGTCTATGCAAGACAGATAAGTGAATGTCTAGCATTATAATGGTGTGAGCATTATAATGGTGTGATCATTACATTTGCTCCCTTAGACTCCAGTAGTTTTGCTGCGTTTCCATCCACGGCACCTACATCAATCACACCTTTAAGGTGTTTTGAAAGGTCAGCCAGTGGGGGACCATTCTCTGTTCATTAATGTCAATACCATCTATTTGTCTGAGAGTGCTGTACATTTCACGTCTTTGAAGAATGCCGAGGCCTACTTGACTTTTTCATAGGGGTGTTAATGCAGTGGACAAACATGTCTATTTCAATAGCCTACTGATTctatcatgtttttttttggtaACTTTTCATGAATTATGACAACTGAAGTCATGTTTGTTATACAAGTCATTACTTTAACTGTACAAAGTTTACATAATACAGAATTTGGTCGTACAATTTCATAataaaatgtgaaatgaatgctTAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773875 lncRNA downstream 30474 42508595 ~ 42508853 (-) True G1550289
TU1773874 lncRNA downstream 32770 42503286 ~ 42506557 (-) True G1550288
TU1773814 lncRNA downstream 36400 42411727 ~ 42502927 (-) True G1550237
TU1773811 lncRNA downstream 38033 42499786 ~ 42501294 (-) True G1550234
TU1773810 lncRNA downstream 50909 42483594 ~ 42488418 (-) True G1550233
TU1773982 lncRNA upstream 38272 42581237 ~ 42588502 (-) True LOC110496309
TU1774018 lncRNA upstream 70730 42613695 ~ 42614584 (-) True G1550417
TU1774025 lncRNA upstream 81761 42624726 ~ 42625121 (-) True G1550421
TU1774027 lncRNA upstream 82830 42625795 ~ 42626027 (-) True G1550423
TU1774123 lncRNA upstream 97278 42640243 ~ 42723707 (-) True G1550508
XM_021570531.2 mRNA downstream 87550 42440345 ~ 42451777 (-) False stom
NM_001124593.1 mRNA downstream 87780 42440625 ~ 42451547 (-) True stom
XM_021572119.2 mRNA downstream 241555 42291667 ~ 42297772 (-) True LOC110496300
XM_036952867.1 mRNA downstream 241811 42291667 ~ 42297516 (-) False LOC110496300
XR_005037488.1 mRNA downstream 241811 42291667 ~ 42297516 (-) False LOC110496300
XM_021572130.2 mRNA upstream 12759 42555724 ~ 42565134 (-) False LOC110496309
XM_021572131.2 mRNA upstream 12759 42555724 ~ 42565137 (-) False LOC110496309
XM_036952886.1 mRNA upstream 12759 42555724 ~ 42565138 (-) False LOC110496309
XM_021572132.2 mRNA upstream 12759 42555724 ~ 42588918 (-) False LOC110496309
XM_021572133.2 mRNA upstream 75109 42618074 ~ 42624506 (-) True LOC110496310
TU1773779 other downstream 179699 42359148 ~ 42359628 (-) True G1550202
TU1773748 other downstream 223248 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 867813 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 867813 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1630702 40905687 ~ 40908625 (-) True LOC118941164
TU1774432 other upstream 352066 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 352066 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 352066 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 352066 42895031 ~ 42929252 (-) False LOC118936491
TU1774433 other upstream 375293 42918258 ~ 42929452 (-) False LOC118936491

Expression Profile