RNA id: TU1774410


Basic Information

Item Value
RNA id TU1774410
length 2894
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC110496315
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42788520 ~ 42804428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCCCATTGCGCTCCCGCAAGGCCTGTTTCTTGTGCCcgacaaacaaaacaaaatggccGACGCCCGAGAGGAAGTGACTCAGCGTTTGTGCCCAGCCAACCGATCAGAAGACTTAAAGaacagcgcaaactgtacCTAAACAGAAtagaaggaggaatgggaggccccggtccacaactgagcaggaggacaagtgcagacagacaaacagacgccaaGTGACCCATCACATTGAAGTTATGATGTCAAGGCCAGTCATCTGGCTCCGCCTCCCTCTGAAGTCCACCACCTGCCGACGGCCACCCCACCTCACCAATAGGGATGTCCATTTCCGAACATAGTGGTGCCCACCTCACCTAAATGGAAGCGGATTGAATCCTCTTGTTAAACCTGAAGCACTTTGTTGCAATTGAGGGATCTCCCTTCAGCCTGGACTGAACATGGGGTAATGTACTGTTGAGTCATGGATACCAATGGATACTCAACCACAGCTGAAAATAGGGTAATGTACTGTTGAGTCACAGATACCAATGGATACTCAACCACAGCTGTGTCTGTGGGCCTAACCCCCAGACTGTCTTCTGAACGTCCGGATATACCAATCAAAGTAGAAGTTTAAACGGACCACTGTGAACTGTTGCGTTTCTGTCCTCCCACAGCTAACTGGCTGGATACATGGACACAAATGGACATATCTGCGATAAGCAGACGgatgtggaccatgatagttgaGAAGAACGTAGACTAATACCCATATTGAAGCATATTGGACTGGCGTATGGAACGCCCATGAGTCCGAATGGTAGACACATAGACCTTGAAGCGGAGTTGTTGTTCCGGAGCCGGAGTATACCATTCAACACAGACGGCATAGGCCACTAGCCCCGTGTTTAGTGAGGGTTGTGAGAAGTGTGCGTGTGCGCTGTGTGCGCTCTGTTGTGATGGTACACCGGCCTCTCTGAGACGACTCTACACACAGCTGTATCTGTCACATCTGCCGTACGTTCGGGGCCGCGGGTCAGCTGATCTGTCGATGCGtatgtgtgcttgtttgtttACTTGTGCTTGTCTGTGTATGTGCACGCACTTCGCGTCAGCCTCACTCAGCGCAAGTTCTGTTCTCGGATTgtaagcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatagtaaagGTCTTGTAAACTGCTTCTGGTTAATGGTCATTGGATTTATCATGCACGTATGCTACAGTACctggcaaaaatatatatatttgacacTGGAGGTTATATGGCTTATTGGTGGAATCCACCACTGATTTTATTATCAAGGGGAGGCAAACAAGTATTTTATATTGGACAGAGCACATAGTATTCCGATAATGTGTGTATAGATAGAACACAtgaaattcattaaaaatagaaacatagaaATGCATCTTGAAATCTATGCAAATGAATCAACAAACAATTTTATCATTTGCTTCTGAGAATCATTCAAATTCTCAGAGGGTTTCGATTTTTTTTCCCAAGGACAATCCTGTTAAATATTGTAGGGTGATGCGAGAGAAATGGAATGAAAGTGCAACGTAGAATGGTTTCTGCTCTCTGGTCCAGACCAAAAAAATATGTTGGGATTTTACCCTTGTTTTTCCTCAACAGCTTTGATACATTTTTAAACAAATGTATCAATATCGAAATATAAACGTTGGACTGGTTCATTCACTTAACTGTGCAGGGACATCTATACATCTTCAGATTGGTTCTAATGGATCGACTGCAAAGTTTCATGTACATTTTTCCACACAACTCCAATTACTTCTGGGATTTCATGTGGACATTTTTACTCTGTGCAGCTTTTATATTTTGTAACTTTTGCCGCTTTTTGTAACCAATAATGTGACTAATCATTCGGAGcaactgcaattcatatttagatttttttggggggggggatttaaCTTCCACAATGTTGAAAATGTTTCATATTTTTCCTGTTGCAAGTTTTAGAAAAACGATGCAATGGCTGTATGAAAAATGTGTTTGATAGTGTGATGTACTGTACAGTTTAACAACAATGTGTACTCCACATGAACAACACATATGCACTATATGAGCAAGTATGCAATATCCTATAGTCTAGAAATACTGTTATCAAGACCACACTATATGTAGTGGGTTACTATGCAATATGTTGTGAGGATTGTGCAATCAGAGTGAATGTGGGCTCTACACGAGGAGTTTAAACTAAACAGTCAGAGTGAATGTGGGCTCTACACGAGGAGTTTAAACTAAACAGCCAGAGTGAATGTGGGCTCTACACGAGGAGTGTAAACTAAACAGTCAGAGTGAATGTGGGCTCTACACGAGGAGTTTAAACTAAACAATCAGAGTGAATGTGGGCTCTACACGAGGAGTTTAAACTAAACAGTCAGAGTGAATGTGGGCTCTACACGAGGAGTTTAAGCTAAACAGTCAGAGTGAATGTGGGCTCTACACGAGGAGTGTAAACTAAACAGTCAGAACGAAGTATCTGTAGATGTACGTATCATGTAGAAAGCAAGAGTGTAATTGATGGAATGTGTGCACTATTTGGAATGTATGCAATTTGTATGGAGGAAGTATGCACTATGTTGAGGGTGAACGCAATGTTTTAATGACAATGTTGGATTTTAAAGAGATGCTTGCATGAGTGCACTATGTCCCTCAAAATGCATAGCCTATGTTAGTTATGTTTGCACATGGCCTCTGAATCCTGACTGTATGGGACTGATTCATTCTTGTACCATGTACTGTGAAGTATGCAGGATTAGTTTACACAATCAATAAAGGTTTAcattggaagaaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774213 lncRNA downstream 6770 42781475 ~ 42781750 (-) True G1550596
TU1774212 lncRNA downstream 7164 42780996 ~ 42781356 (-) True G1550595
TU1774204 lncRNA downstream 13417 42770250 ~ 42775103 (-) True G1550587
TU1774200 lncRNA downstream 28052 42759998 ~ 42760468 (-) True G1550583
TU1774172 lncRNA downstream 41168 42701324 ~ 42747352 (-) True G1550556
TU1774423 lncRNA upstream 16411 42814132 ~ 42814334 (-) True G1550738
TU1774475 lncRNA upstream 57990 42855711 ~ 42855949 (-) True G1550769
TU1774498 lncRNA upstream 98370 42896091 ~ 42963338 (-) True G1550790
TU1774456 lncRNA upstream 102183 42899904 ~ 42933030 (-) True G1550750
TU1774501 lncRNA upstream 107707 42905428 ~ 42938066 (-) True G1550793
XM_021572133.2 mRNA downstream 164014 42618074 ~ 42624506 (-) True LOC110496310
XM_021572132.2 mRNA downstream 199602 42555724 ~ 42588918 (-) False LOC110496309
XM_036952886.1 mRNA downstream 223382 42555724 ~ 42565138 (-) False LOC110496309
XM_021572131.2 mRNA downstream 223383 42555724 ~ 42565137 (-) False LOC110496309
XM_021572130.2 mRNA downstream 223386 42555724 ~ 42565134 (-) False LOC110496309
XM_021572149.2 mRNA upstream 61150 42858871 ~ 42866233 (-) True LOC110496317
XM_036951049.1 mRNA upstream 164255 42961976 ~ 42966016 (-) False LOC118936491
XM_036952898.1 mRNA upstream 197730 42995451 ~ 43005501 (-) True LOC110496326
XM_021572155.2 mRNA upstream 431210 43228931 ~ 43258006 (-) True LOC110496330
XR_005037490.1 mRNA upstream 685700 43483421 ~ 43517409 (-) True LOC110496334
TU1773779 other downstream 428892 42359148 ~ 42359628 (-) True G1550202
TU1773748 other downstream 472441 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 1117006 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 1117006 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1879895 40905687 ~ 40908625 (-) True LOC118941164
TU1774432 other upstream 97310 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 97310 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 97310 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 97310 42895031 ~ 42929252 (-) False LOC118936491
TU1774433 other upstream 120537 42918258 ~ 42929452 (-) False LOC118936491

Expression Profile