RNA id: XM_021572149.2


Basic Information

Item Value
RNA id XM_021572149.2
length 2959
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110496317
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42858871 ~ 42866233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGTTATCACACGATATGAGTAACCACAAAAACTTTCCTGCAACGATTTACCTTGCGCACCTGTCAAACAACTCAACCTTACTCGAGTTTCACATTACGACAAATCTGAAAAACACTTCCTTCTTGCACTGAGCCAATTCCACGTTTTTACTATTTTAATCTTATGGAGCAGCATGCAGCCTAGACGTCGGGTGAATGAATAGAACTTGACCTTATGATAATGAGATTTGGCACCAACTTGTTTTATGGAATATAATTGTAAATCTTGAAACTGAAAAGTAAATAGTCACTTTGCAGGAAGACACACTGGCCAATAATTGCACACACAACACAGCCCAGACAGGAATATCATACAGATAGAGACAGGTGAGAAACAGTGATGTCCGTGCACCTAAATCCAGATGAAGACAGAGCCGGAGGGCCTTCTAAAACCAGTGGGTCTACCGCTGCAGGACCTCAAACACCTGGAACGGAACAACAGGGCCTAGAGCACAGGGGGATGGAAAAAGAGCAGGGGGAAGAGGATGAGAAGCAAGAGGCGAAAAGGGAAACCAGCTCCGCTGCCTTGGAGCCTAGCACTTTGCTGTggctgggagacagagagggggagaaaggaggtgTGGTGTCTGAGAGCGAGGGAGCtgaaggggatgaggaggaggaggaggaggagagggtggcagagaggataggagggagtACAGAGCTTTTGGAGGGACAGGAGAGCCAGCCAGAGAGTGAGCGAAAGGCAAAATGGAGAGAGAGCatgccagagggagagagatggagagatgatgaGTTGGAGGGAGGCCAACGTGAGGAAATGGATGGTTCGCTTGCagatgatgaggaagagggggaggaaggcccAGTGAATTGGATGCCAGAGAAGGTTGCGCAGGTCTTCACTCCGACAGTGATAGTGCGTCCATCTAGCAAACGGGAGGAGTTCCCACTTGAAAATAGCAGGTATGGAGAGATGGATACTGAGAAGAGACCTTTCTTAGAGCCCCAGACACCAACAGCCCCACCAGTACTCTACTACCCACAGTGGACAGAGGAGCCGGACAACTACACACATATGTGTGGTGGTAGTTGTGGGGATGTTCTGAAACTTGGCCTGGGCATTGGTGCTGCAGCTGTTCTCTTCCCTCTACTTGTGTGGGGCGGATATGCCCTTTTGCCCTTTGATGCCCCACCCCTGGACAGCGCCCCTCTCAGGCTGGTGTACACACTGCGCTGCTCCTTCTTTGCTGTCATACCCATTATGCTAGGTGTGCTGGTGCAGGGGTTGGCGCGGCTACGCTACGGCGCCCTAACGCCCCTCTACGAGGCCAAGGTGGGGGAGGAGAGCCGGGAGGTGGCAGTCCACCGGCACTACGTGGGCGActcgctctccctcttcctaCTCTACTTCCTGCAGCTGGCCGTCATGGCCACCTACATCAGCCAGGACCTGCTCAAGATGGTGCCCCTGCTCACCATCGTCTTTGCCTTCGGCAGGCTGATCTACTGGGTGTGTGTGACCCTAGGCAGCAGCGTGAGGGGTTTGGGCTTCGGCCTCTCCTTCCTGCCCATACTGGTCATGTTGGGCGCCAACCTCTACTTTGTGTGCTCGTCAGTCAGTGAAGGGGCTGTCTTTGATGTGGCCCcgcccaccaccaccccacctcccAGGCAGAGTTGGTGGGGctaggaggaagaggagtagaTGCGTCCAATCCTGAAGATTAAATGGACCCCCAGTCCCTAGACACTTAAACCTGAAAGGATTAGATATTACCATGTAACTTATACCTACAGTATCATATGTACACTTTGCCTTCTGATAGATCAGAGGCACGTTCCTTAGGCAAACGTTGTGCAACCTTGCAGATAGCATGTAGCGTAAGGAATACATTTCTGAGATGCAAGTCTGTTATCAACAATATAACACACAAGTTCCTCAGTGTTTTGCCCTACTGAATAATTTGAGTGAATGGTTCAATTGGCACCCACTCATTGTCATGATGTTTGTTTGGAAGGAGTAAGGGAGAAGAATCAAGTTCTTGGATTTCATGTCCTTCATCTGGAACATATTGGATCACATTGAACAATGGTTTATGGAGAGCTGGACAATTCATTAAGATGACGTGGGGCTAGTAACAGTTAGCCACCCCAATGAAGTTACCTGTAGTAGAATGATTGTGATATAAAGTGTCTTATGCCGTACATAAGCCAAAGAGGAATGGACCATCCATAAAATAAGACATGTAaggcctgggttgtgttcattaggcacaaaaCGTTAAAAAAAGATTTTTTTAATGTAGCAAAGGAAAATGagcgtttaaaaaaataattattggACAATCCAGGTTGTTCTTCCCCGTCTGTTTTCCTCCGTTTGTGGCCTAAAACACAACTTTGTGCAGTATATCCTTACTAACTAGAATTGTGTTTTATTCTAATCTCATGGCTTTGGTGAAGGATGGTCCAGAGCTTCACTGGAAGGTTTCATAATGAGCTATGACGACATGACTAGTCGgcactatacagtacatcctgAAGGGGGTGGTCTTCCCCAAGTTATTAAAATGTATGAAGACTTAAGTGCCAACATTGAAGTATGAACCTAGGGCGGAGTTGACTTTTTTGAATGCGTATAACATAAAATCCATGTggatattttattatttcttcAACTGTGCCATGTTTACATGTATTTCCTTTCTACAATAGTACAGCATTTACTACCACAATGAATGGGAATGAAGAATATGTTAATTGATAGCTATTTAAGAATGTGTTATGTTAATTATGTCTGTACAGTACCATAACCAATGCACATACATTGTCCTGTTTGTATATGGAAGACAGCTCATAATTGTTGTATTTCTTTTGGGCATTATCTTTCAATGTTTACACTATCTTAATGGAATGATGTGATTCACATAATAAAGTAGCTACTAATCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774475 lncRNA downstream 2922 42855711 ~ 42855949 (-) True G1550769
TU1774423 lncRNA downstream 44537 42814132 ~ 42814334 (-) True G1550738
TU1774410 lncRNA downstream 61150 42788520 ~ 42797721 (-) False LOC110496315
TU1774411 lncRNA downstream 61150 42788520 ~ 42797721 (-) True LOC110496315
TU1774213 lncRNA downstream 77121 42781475 ~ 42781750 (-) True G1550596
TU1774498 lncRNA upstream 29858 42896091 ~ 42963338 (-) True G1550790
TU1774456 lncRNA upstream 33671 42899904 ~ 42933030 (-) True G1550750
TU1774501 lncRNA upstream 39195 42905428 ~ 42938066 (-) True G1550793
TU1774508 lncRNA upstream 76828 42943061 ~ 42953940 (-) True G1550800
TU1774571 lncRNA upstream 219551 43085784 ~ 43086352 (-) True G1550861
XR_002469543.2 mRNA downstream 54443 42788520 ~ 42804428 (-) False LOC110496315
XR_005037489.1 mRNA downstream 62128 42788520 ~ 42796743 (-) False LOC110496315
XM_021572133.2 mRNA downstream 234365 42618074 ~ 42624506 (-) True LOC110496310
XM_021572132.2 mRNA downstream 269953 42555724 ~ 42588918 (-) False LOC110496309
XM_036952886.1 mRNA downstream 293733 42555724 ~ 42565138 (-) False LOC110496309
XM_036951049.1 mRNA upstream 95743 42961976 ~ 42966016 (-) False LOC118936491
XM_036952898.1 mRNA upstream 129218 42995451 ~ 43005501 (-) True LOC110496326
XM_021572155.2 mRNA upstream 362698 43228931 ~ 43258006 (-) True LOC110496330
XR_005037490.1 mRNA upstream 617188 43483421 ~ 43517409 (-) True LOC110496334
XM_036952901.1 mRNA upstream 652189 43518422 ~ 43538399 (-) False LOC110496332
TU1773779 other downstream 499243 42359148 ~ 42359628 (-) True G1550202
TU1773748 other downstream 542792 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 1187357 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 1187357 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1950246 40905687 ~ 40908625 (-) True LOC118941164
TU1774432 other upstream 28798 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 28798 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 28798 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 28798 42895031 ~ 42929252 (-) False LOC118936491
TU1774433 other upstream 52025 42918258 ~ 42929452 (-) False LOC118936491

Expression Profile