RNA id: TU1774292


Basic Information

Item Value
RNA id TU1774292
length 817
lncRNA type read_through
GC content 0.49
exon number 3
gene id LOC110496322
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42872572 ~ 43014066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTCTTTATTATCTCAACATGTCAGAACCAACAGCATTCTAGTAATAAGGTTCAGAACACATGTGATATGAAAGCCAAACAGATCTATTTGACATCAGAATCAGACATGTATTCTGTTCTTTGTTCCACTATGCTAAAAGCTCCTGCTGGAGGAAGGATTCACACACAGGATCCAGCCCAGCATTAGATCAGTGTGCTGGTGTTACTGGAACAGTAAGAAGGAGAGGTGCAGAGTAAAAACAGTGTAGTCAGAGGGGGGAACTCAATCAGAACACTGGTCTCTCCTCAGTGTCTCAGAGAGCGGAGACTGGGAGCCCTGGGTGGCCTCGCAGGTCACAGAGCCCACCTTCTTCCACTGGTCGACAGGGAGGGTCAGGGTGCTGCTCCAGCTGTAGTGGTCGTCCTTCTCCAGGACCCCGGGGCTCCCGGTCACCTCCCACgtgccactgctgctgctgccgtCCACCTTCCAGCTCAGCTTCCAGTCTGAGGGGAAGCCCTTGTTGGCCAGGCACATGAGAGTGGCCTTCCCCTGCTGCAGCTCCACACTGGAGGGGGGCAGGACTGTCAGGGTGGGACGAACATCACCTAAAAGACAGGTGGGAAGTTATGGAGAGGGGAACTATCAATCAATCATCAGACTGATATGACAATAATGATGCAGCAGTTTTACATCTTAGctgtaaattacattttttttccatCAGTAGGTTTCTGTTCCTCATACAGACAGTCAGTTTATCACACTTCCCTTTGAGTAGCTACTGAAGCATATTATAACTACATGAGATGACTGAAAATACAATCAACTATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774251 lncRNA upstream 101120 42816886 ~ 42817129 (+) True G1550619
TU1774211 lncRNA upstream 136983 42781059 ~ 42781266 (+) True G1550594
TU1774210 lncRNA upstream 137438 42780579 ~ 42780811 (+) True G1550593
TU1774085 lncRNA upstream 170894 42701324 ~ 42747355 (+) True LOC110496314
TU1774012 lncRNA upstream 292830 42625042 ~ 42625419 (+) True G1550411
TU1774315 lncRNA downstream 29313 42992121 ~ 42997284 (+) True G1550637
TU1774367 lncRNA downstream 39424 43002232 ~ 43004601 (+) True G1550687
TU1774374 lncRNA downstream 57055 43019863 ~ 43020624 (+) True G1550692
TU1774314 lncRNA downstream 61457 43024265 ~ 43025705 (+) True G1550636
TU1774391 lncRNA downstream 78063 43040871 ~ 43041170 (+) True G1550707
XR_002469627.2 mRNA upstream 37813 42878791 ~ 42880436 (+) True LOC110496936
XM_036952897.1 mRNA upstream 40324 42869086 ~ 42877925 (+) False LOC110496823
XM_036952896.1 mRNA upstream 40324 42870251 ~ 42877925 (+) True LOC110496823
XM_021572147.2 mRNA upstream 64762 42824724 ~ 42853487 (+) False LOC110496316
XM_021572153.2 mRNA downstream 95229 43058037 ~ 43085386 (+) False LOC110496329
XM_021572154.2 mRNA downstream 95683 43058491 ~ 43085386 (+) False LOC110496329
XR_002469544.2 mRNA downstream 295770 43258578 ~ 43283536 (+) False LOC110496331
XM_021572161.2 mRNA downstream 1018264 43981072 ~ 43985638 (+) False LOC110496337
XM_021572162.2 mRNA downstream 1033476 43996284 ~ 44007578 (+) True LOC110496338
TU1774284 other upstream 18047 42899629 ~ 42900202 (+) False LOC110496322
TU1774282 other upstream 24784 42889628 ~ 42893465 (+) False LOC110496322
TU1774307 other upstream 24784 42889628 ~ 42893465 (+) False LOC110496322
TU1774246 other upstream 109444 42808458 ~ 42808805 (+) True G1550614
TU1773187 other upstream 572495 42344986 ~ 42345754 (+) True G1549676
TU1775130 other downstream 627728 43590536 ~ 43594314 (+) True G1551388
TU1775636 other downstream 1223085 44185893 ~ 44187344 (+) True G1551855
TU1776003 other downstream 1534104 44496912 ~ 44497132 (+) True G1552184
TU1776014 other downstream 1542325 44505133 ~ 44505494 (+) True G1552195
TU1777185 other downstream 2496764 45459572 ~ 45459883 (+) True G1553260

Expression Profile

TU1774292 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

TU1774292 Expression in each Bioproject

Bar chart with 14 bars.
TU1774292 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU322838 False 846 lncRNA 0.51 2 NW_024375613.1 245238 ~ 259245 (+)