RNA id: TU1774450


Basic Information

Item Value
RNA id TU1774450
length 781
RNA type TUCP
GC content 0.55
exon number 4
gene id LOC118936491
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42895031 ~ 43015119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTTCGGTGGAGGGACCAAACTGAGTGTTGGAAGTGATGTTCGTCCCACCCTGACAGTCCTGCCCCCCTCCAGTGTGGAGCTGCAGCAGGGGAAGGCCACTCTCATGTGCCTGGCCAACAAGGGCTTCCCCTCAGACTGGAAGCTGAGCTGGAAGGTGGacTTTCGGTGGAGGGACCAAACTGGGTGTTGGCAGTGATGTTCGTCCCACCCTGACAGTCCTGCCCCCCTCCAGTGTGGAGCTGCAGCAGGGGAAGGCCACTCTCATGTGCCTGGCCAACAAGGGCTTCCCCTCAGACTGGAAGCTGAGCTGGAAGGTGgacggcagcagcagcagcacctgGGAGGTGACCGGGAGCCCCGGGGTCCTGGAGAAGGATGGCCACTACAGCTGGAGCAGCACCCTGACCCTCCCTGTCGACCAGTGGAAGAAGGTGGGCTCTGTGACCTGCGAGGCCACCCAGGGCTCCCAGTCTCCGCTCTCTGAGACACTGAGGAGAGACCAGTGTTCTGATTGAGTTCCCCCCTCTGACTACACTGTTTTTACTCTGCACCTCTCCTTCTTACTGTTCCAGTAACACCAGCACACTGATCTAATGCTGGGCTGGATCCTGTGTGTGAATCCTTCCTCCAGCAGGAGCTTTTAGCATAGTGGAACAAAGAACAGAATACATGTCTGATTCTGATGTCAAATAGATCTGTTTGGCTTTCATATCACATGTGTTCTGAACCTTATTACCATAATGCTGTTGTTTCTGACATGTTGAGATAATAAAGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774475 lncRNA downstream 71464 42855711 ~ 42855949 (-) True G1550769
TU1774423 lncRNA downstream 113079 42814132 ~ 42814334 (-) True G1550738
TU1774410 lncRNA downstream 129692 42788520 ~ 42797721 (-) False LOC110496315
TU1774411 lncRNA downstream 129692 42788520 ~ 42797721 (-) True LOC110496315
TU1774213 lncRNA downstream 145663 42781475 ~ 42781750 (-) True G1550596
TU1774571 lncRNA upstream 121754 43085784 ~ 43086352 (-) True G1550861
TU1774576 lncRNA upstream 129063 43093093 ~ 43093295 (-) True G1550866
TU1774800 lncRNA upstream 156292 43120322 ~ 43120941 (-) True G1551071
TU1774816 lncRNA upstream 181732 43145762 ~ 43146344 (-) True G1551087
TU1775360 lncRNA upstream 633409 43597439 ~ 43598917 (-) True G1551599
XM_021572149.2 mRNA downstream 61180 42858871 ~ 42866233 (-) True LOC110496317
XR_002469543.2 mRNA downstream 122985 42788520 ~ 42804428 (-) False LOC110496315
XR_005037489.1 mRNA downstream 130670 42788520 ~ 42796743 (-) False LOC110496315
XM_021572133.2 mRNA downstream 302907 42618074 ~ 42624506 (-) True LOC110496310
XM_021572132.2 mRNA downstream 338495 42555724 ~ 42588918 (-) False LOC110496309
XM_036952898.1 mRNA upstream 31421 42995451 ~ 43005501 (-) True LOC110496326
XM_021572155.2 mRNA upstream 264901 43228931 ~ 43258006 (-) True LOC110496330
XR_005037490.1 mRNA upstream 519391 43483421 ~ 43517409 (-) True LOC110496334
XM_036952901.1 mRNA upstream 554392 43518422 ~ 43538399 (-) False LOC110496332
XM_036952902.1 mRNA upstream 554392 43518422 ~ 43539103 (-) True LOC110496332
TU1774437 other downstream 7056 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other downstream 7306 42895031 ~ 42920107 (-) False LOC118936491
TU1774432 other downstream 30350 42895031 ~ 42897063 (-) False LOC118936491
TU1773779 other downstream 567785 42359148 ~ 42359628 (-) True G1550202
TU1773748 other downstream 611334 42315286 ~ 42316079 (-) True G1550177
TU1774442 other upstream 11968 42975998 ~ 43015119 (-) False LOC118936491
TU1774436 other upstream 49172 43013202 ~ 43015119 (-) True LOC118936491
TU1775356 other upstream 666976 43631006 ~ 43632877 (-) True LOC118940987
TU1776616 other upstream 1856733 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 2083650 45047680 ~ 45087786 (-) False G1552866

Expression Profile