RNA id: XM_036951052.1


Basic Information

Item Value
RNA id XM_036951052.1
length 4573
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118940980
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43571589 ~ 43576903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTATCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCGACCTCTACAACTTCAGCACCCACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccaCTACAACAACTGTTGCTCCTTCAATGTCAATctcaactgcaggtcctactaccaATTTAACTccaacgacaaccacaactgaagctctTACAGACatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTACAACTGTAGCATcacctacaacaacaactgcagatgcttccaccaccacaaGTGCAGCACCTACTACATCAATCccaactgcaggtcctactaccaTTTTGACTACTAAGACAATCAGAACTGAATCTCCTATAGACatcactactgtagctcctttgaACCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAATGCAACAGCAGCATCTACTACGTCAATCACAACTGTAGGTCCTACTAACATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTAGCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCGACCTCTACAACTTCAGCACCCACTACTTTATTCACAACTGCAGGTGCTACTACCATTTTACCTCcttcgacaaccacaacaacatccaCTACAACAACTGTTGCTCCTTCAATGTCAATctcaactgcaggtcctactaccaATTTAACTccaacgacaaccacaactgaagctctTACAGAAatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTGCAGCATcacctacaacaacaactgcagatGCTTCCACAACCACAGGTGCAGCACTTACTACATCAATctcaactgcaggtcctactgACATTTTGACTACTAAGACAATCACAACTGAATCTCCTACAGAAATCACAACTGTAGCTCTTATGACCCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCACCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACATCACTACTGTAGCTCCTATGCCCCCCACAATTGCAACTTCAACTACAACTGTAGCATcacctacaacaacaactgcagatgcttccaccaccacaaGTGCAGCACCTACTACATCAATCccaactgcaggtcctactaccaTTTTGACTACTAAGACAATCACAACTGAATCTCCTATAGACatcactactgtagctcctttgaACCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTATAACAGCAACTGTAGCTGCTTCCATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTAGCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCGACCTCTACAACTTCAGCACCCACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccaCTACAACAACTGTTGCTCCTTCAATGTCAATctcaactgcaggtcctactaccaATTTAACTccaacgacaaccacaactgaagctctTACAGAAatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTGCAGCATcacctacaacaacaactgcagatGCTTCCACAACCACAGGTGCAGCACTTACTACATCAATctcaactgcaggtcctactaccaTTTTGACTACTAAGACAATCACAACTGAATCTCCTACAGAAATCACAACTGTAGCTCTTATGACCCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCACCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACATCACTACTGTAGCTCCTATGCCCCCCACAATTGCAACTTCAACTACAACTGTAGCATcacctacaacaacaactgcagatgcttccaccaccacaaGTGCAGCACCTACTACATCAATCccaactgcaggtcctactaccaTTTTGACTACTAAGGCAATCACAACTGAATCTCCTATAGACATCACTACTGTAGCTCATTTGAACCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTAGCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCAACCTCTACAACTTCAGCACCCACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccaATACAACAACTGTTGATCCTTCAATGTCAATctcaactgcaggtcctactaccaATTTAACTccaacgacaaccacaactgaagctctTACAGACatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTGCAGCATcacctacaacaacaactgcagatGCTTCCACAACCACAGGTGCAACACTTACTACATCAATctcaactgcaggtcctactaccaTTTTGACTCCTAAGACAATCACAATTGAAGCTCCTACAGAAATCACAACTGTAGCTCTTATACCCCCCACAATTGCAACTTCAACTACAACTGTAGCATCACCTACAACAGCAACTgcagatgcttccaccaccacaagtgcagctcctactacatcAATCCCAACTGCAGGTCCAACTACCATTTTGACTACTAAGACAATCACAACTGAATCTCCTACAGAAATCACAACTGAAGCTCTTATGACCCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGAAGCTCCTACATTTACTACTGCATCCCCTAATGCAACCACAACAGAAGCTCcttctacaacaactAAATCACAACTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774816 lncRNA downstream 425245 43145762 ~ 43146344 (-) True G1551087
TU1774800 lncRNA downstream 450648 43120322 ~ 43120941 (-) True G1551071
TU1774576 lncRNA downstream 478294 43093093 ~ 43093295 (-) True G1550866
TU1774571 lncRNA downstream 485237 43085784 ~ 43086352 (-) True G1550861
TU1774508 lncRNA downstream 617649 42943061 ~ 42953940 (-) True G1550800
TU1775360 lncRNA upstream 20536 43597439 ~ 43598917 (-) True G1551599
TU1775358 lncRNA upstream 53378 43630281 ~ 43630883 (-) False LOC118940987
TU1775385 lncRNA upstream 97737 43674640 ~ 43706492 (-) True G1551623
TU1775496 lncRNA upstream 334130 43911033 ~ 43911239 (-) True G1551725
TU1775673 lncRNA upstream 409626 43986529 ~ 43986759 (-) True G1551892
XM_036951051.1 mRNA downstream 31 43567310 ~ 43571558 (-) True LOC118940979
XM_036951050.1 mRNA downstream 4948 43561787 ~ 43566641 (-) True LOC118940978
XM_021572158.2 mRNA downstream 11131 43554035 ~ 43560458 (-) True LOC110496335
XM_036952902.1 mRNA downstream 32486 43518422 ~ 43539103 (-) True LOC110496332
XM_036952901.1 mRNA downstream 33190 43518422 ~ 43538399 (-) False LOC110496332
XM_036951053.1 mRNA upstream 754 43577657 ~ 43584921 (-) True LOC118940981
XM_036951054.1 mRNA upstream 8032 43584935 ~ 43595178 (-) True LOC118940982
XM_036952903.1 mRNA upstream 18633 43595536 ~ 43596702 (-) True LOC118941171
XM_036951055.1 mRNA upstream 21637 43598540 ~ 43603485 (-) True LOC118940983
XM_036951056.1 mRNA upstream 27421 43604324 ~ 43607758 (-) True LOC118940984
TU1774438 other downstream 556470 42961990 ~ 43015119 (-) False LOC118936491
TU1774440 other downstream 556470 42961990 ~ 43015119 (-) False LOC118936491
TU1774442 other downstream 556470 42975998 ~ 43015119 (-) False LOC118936491
TU1774436 other downstream 556470 43013202 ~ 43015119 (-) True LOC118936491
TU1774434 other downstream 607559 42961990 ~ 42964030 (-) False LOC118936491
TU1775356 other upstream 54103 43631006 ~ 43632877 (-) True LOC118940987
TU1776616 other upstream 1243860 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 1470777 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 1488231 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 2090458 45667361 ~ 45667740 (-) True G1553544

Expression Profile