RNA id: XM_036951054.1


Basic Information

Item Value
RNA id XM_036951054.1
length 2424
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC118940982
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43584935 ~ 43595178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgaagcttcttctaaAACGActacagcacctacgacaaccacaacaatctCCCCTtcgacaactgtagctccaacaACGCCCATCACAACCGAAGGTCCTACTACCATTTtaactcctacgacaaccacaactgtagcaCCTACGACAAAGACAACAACATCCTTttcgacaactgcagctccaacaacTGTAGTTCCTACAACGCCAATCAAAACTGCAGGACCTACTACCATTGTAAGTCCTACGACAAACACAAATGTAGCTCCTACAGCAACCACAACAGCAGCTAGTACAACAAATGTAGCTCCAACgatcactacaactgcagcagcaCCAACTGTAGCTGCATCCACAACCACTACTGCAGCCCCTATGGCAACAACAACTCTAGCTACAATAGCAAGCACAACAGTAGctgctacgacaaccactgcCGCTTCTATAACATCTACAACAAGCGCAACAGTAACCCCTACGGCAACAACTACAGCTTCTTCTACGACAAAAATTGTAGATCCTGCGACCACCACAAATGATGCAGCTACTACAACAACCGCAGCTCCTACAACTCCAACTGTAGCTTCTTCCACAAGGACAAGTGAAGcccctactgcaaccacaacaGAAGCTTATTCTACAACAGCTGTAGAAACTACGACGACCACAACAGCAtcccctacgacaactgcagctcctactacaaccaccGGAGCTCCTACGGCCACTTCAACAGCAGCagctcttacaacaacaactgaagctgcttccacaagcactaCTGCAGCCACTACTGCAACCACAACAGAAGCTTATTCTACAACAACTGTAGAaactacaactaccacaacaacatcccctacgacaactgcagctcctactacaaccaccGGAGCACCTACGGCCACTTCAACAGCAGCagctcttacaacaacaactgaagCTGCTTCCACAAGCAATACTGCAGcccctactgcaaccacaactgaagcttctAACTGCAGCTCCTACtgcaacaactgtagctccaacaACGCCAATCACAACTGCAGGTCATACTACCATTTTAACTCCTACAGCAACCACAACAGCAGCTActgcttccACAACCACGACTGCATTCCCTACTGCAACAACAACTGTagcttcttctacaacaactgtagcaacTGCGACAACCATGAAAACATCCCCTTcgacaactgcagctgctactataACAATTGTAGCACCTGCAACGTCATTCACAAATGCACTTCCTACTACCATTTTAACTCCTACGACAACCAAAAcagcagctcctacgacaacaaCTCTAGCTCCTACAACCGCTACAACCTCAGCACCGACTACATCAATCACAACTGCAGcccctactgcaaccacaacaacagctccTACTACAGCTGTAGCACCTATAACCACAACAGCAGCTACTACAATACCTGTAGCTCCTACAACCACTACAGCACTTACTACGTCAATCAtaacaactgtagctccttcaATGCcaatcacaactacagctcctacaacaacaactCTTGCTCCTACAACCTCTACAACTTCAGCACCCACTACGTCATTCACAACTGCAGGACCTACTACCAATTTACCTCcttcgacaaccacaacaacatccactacaacaactgtagctcctacaatGTCAATCTCAACTGCAGATTCAACTGCATCAACTGTTGCTCCTACGACCACAACTGCAGCAGCTCCAataacaacaactgtagctgcttccATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcagCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCCTACGAACTCTACAACTTCAGCACACACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccaCTACAACAACTGTTGCTCCTTCAATGTCAATctcaactgcagCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCACCTACTACATCAATCccaactgcagCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcagCATcacctacaacaacaactgcagatgcttccaccaccacaaGTGCAGCACCTACTACATCAATCCCAACTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcaggtcctactaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774816 lncRNA downstream 438591 43145762 ~ 43146344 (-) True G1551087
TU1774800 lncRNA downstream 463994 43120322 ~ 43120941 (-) True G1551071
TU1774576 lncRNA downstream 491640 43093093 ~ 43093295 (-) True G1550866
TU1774571 lncRNA downstream 498583 43085784 ~ 43086352 (-) True G1550861
TU1774508 lncRNA downstream 630995 42943061 ~ 42953940 (-) True G1550800
TU1775360 lncRNA upstream 2261 43597439 ~ 43598917 (-) True G1551599
TU1775358 lncRNA upstream 35103 43630281 ~ 43630883 (-) False LOC118940987
TU1775385 lncRNA upstream 79462 43674640 ~ 43706492 (-) True G1551623
TU1775496 lncRNA upstream 315855 43911033 ~ 43911239 (-) True G1551725
TU1775673 lncRNA upstream 391351 43986529 ~ 43986759 (-) True G1551892
XM_036951053.1 mRNA downstream 14 43577657 ~ 43584921 (-) True LOC118940981
XM_036951052.1 mRNA downstream 8032 43571589 ~ 43576903 (-) True LOC118940980
XM_036951051.1 mRNA downstream 13377 43567310 ~ 43571558 (-) True LOC118940979
XM_036951050.1 mRNA downstream 18294 43561787 ~ 43566641 (-) True LOC118940978
XM_021572158.2 mRNA downstream 24477 43554035 ~ 43560458 (-) True LOC110496335
XM_036952903.1 mRNA upstream 358 43595536 ~ 43596702 (-) True LOC118941171
XM_036951055.1 mRNA upstream 3362 43598540 ~ 43603485 (-) True LOC118940983
XM_036951056.1 mRNA upstream 9146 43604324 ~ 43607758 (-) True LOC118940984
XM_036951057.1 mRNA upstream 13027 43608205 ~ 43610335 (-) True LOC118940985
XM_036951058.1 mRNA upstream 19496 43614674 ~ 43622823 (-) True LOC118940986
TU1774438 other downstream 569816 42961990 ~ 43015119 (-) False LOC118936491
TU1774440 other downstream 569816 42961990 ~ 43015119 (-) False LOC118936491
TU1774442 other downstream 569816 42975998 ~ 43015119 (-) False LOC118936491
TU1774436 other downstream 569816 43013202 ~ 43015119 (-) True LOC118936491
TU1774434 other downstream 620905 42961990 ~ 42964030 (-) False LOC118936491
TU1775356 other upstream 35828 43631006 ~ 43632877 (-) True LOC118940987
TU1776616 other upstream 1225585 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 1452502 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 1469956 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 2072183 45667361 ~ 45667740 (-) True G1553544

Expression Profile