RNA id: XM_036951055.1


Basic Information

Item Value
RNA id XM_036951055.1
length 2256
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC118940983
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43598540 ~ 43603485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCAACAACAACTCTAGCTACAATAGCAAGCACAACAGTAGctgctacgacaaccactgcCGCTTCTATAACATCTACAACAAGCGCAACAGTAACCCCTACGGCAACAACTACAGCTTCTTCTACGACAAAAATTGTAGATCCTGTGACCACCACAAATGATGCAGCTACTACAACAACCGCAGCTCCTACAATTCCAACTGTAGCTTCTTCCACAAGGACAAGTACAGCCCCTACTGGAACCACAACAGAAGCTTCTTCTATAACAGCTGTAGAAACTACGACGACCACAACAACAtcccctacgacaactgcagctcctactacaaccaccGGAGCTCCTACGGACACTTCAACAGCAGCagctcttacaacaacaactgaagctgcttccacaagcactaCTGCAGCCACTACTGCAACCACAACAGAAGCTTATTCTACAACAACTGTAGAaactacaactaccacaacaacatcccctacgacaactgcagctcctactacaaccaccGGAGCACCTACGGCCACTTCAACAGCAGCagctcttacaacaacaactgaagCTGCTTCGACAAGCACTACTGCAGcccctactgcaaccacaactgaagcttcttctacaacaactacagcacctacgacaaccacaacaatctCCCCTtcgacaactgtagctccaacaACGCCAATCACAACCGAAGGTCCTACTACCATTTtaactcctacgacaaccacaactgtagcaCCTACGACAAAGACAACAACATCCTTttcgacaactgcagctccaacaacTGTAGTTCCTACAACGCCAATCAAAACTGCAGGACCTACTACCATTGTAAGTCCTACGACAAACACAAATGTAGCTCCTACAGCAACCACAACAGCAGCTAGTACAACAAATGTAGCTCCAACgatcactacaactgcagcagcaCCAACTGTAGCTGCATCCACAACCACTACTGCAGCCCCTATGGCAACAACAACTCTAGCTACAATAGCAAGCACAACAGTAGCTGCTCCGACAACCACTGCCGCTTCTATAACATCTACAACAAGCGCAACAGTAACCCCTACGGCAACAACTACAGCTTCTTCTACGACAAAAATTGTAGATCCTGCGACCACCACAAATGATGCAGCTACTACAACAACCGCAGCTCCTACAACTCCAACTGTAGCTTCTTCCACAAGGACAAGTGAAGcccctactgcaaccacaacaGAAGCTTATTCTACAACAGCTGTAGAAACTACGACGACCACAAAAACATaccctacgacaactgcagctcctactacaaccaccGGAGCTCCTACGGCCACTTCAACAGCAGCagctcttacaacaacaactgaagctgcttccacaagcactaCTGCAGCCACAACTGCAACCACAACAGAAGCTTATTCTACAACAACTGTAGAaactacaactaccacaacaacatcccctacgaaaactgcagctcctactacaaccaccGGAGCACCTACGctcctactacaacaactcacctacgacaacGACAACAATCTCCCcttcaacaactgtagctccaacaACGCCAATCACAACCGAAGGTCCTACTACCATTTtaactcctacgacaaccacaactgtagcaCCTACGACAAAGACAACAACATCCTTttcgacaactgcagctccaacaacTGTAGTTCCTACAACGCCAATCAAAACTGCAGGACCTACTACCATTGTAAGTCCTACGACAAACACAAATGTAGCTCCTACAGCAACCACAACAGCAGCTAcacctacgacaaccacaacaatctCCCCTtcgacaactgtagctccaacaACGCCCATCACAACCGAAGGTCCTACTACCATTTtaactcctacgacaaccacaactgtagcaCCTACGACAAAGACAACAACATCCTTttcgacaactgcagctccaacaacTGTAGTTCCTACAACGCCAATCAAAACTGCAGGACCTACTACCATTGTAAGTCCTACGACAAACACAAATGTAGCTCCTACAGCAACCACAACAGCAGCTActcctacaactccAACTGTAGCTTCTTCCACAAGGACAAGTGCAGcccctactgcaaccacaacaGAAGCTTCTTCTATAACAGCTGTAGAAACTACGATGACCACAACAACAtcccctacgacaactgcagctcctactacaaccaccGGAGCTCCTACGGCCACTTCAACAGCAGCAGCTCTTACAACATCAACTGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774816 lncRNA downstream 452196 43145762 ~ 43146344 (-) True G1551087
TU1774800 lncRNA downstream 477599 43120322 ~ 43120941 (-) True G1551071
TU1774576 lncRNA downstream 505245 43093093 ~ 43093295 (-) True G1550866
TU1774571 lncRNA downstream 512188 43085784 ~ 43086352 (-) True G1550861
TU1774508 lncRNA downstream 644600 42943061 ~ 42953940 (-) True G1550800
TU1775358 lncRNA upstream 26796 43630281 ~ 43630883 (-) False LOC118940987
TU1775385 lncRNA upstream 71155 43674640 ~ 43706492 (-) True G1551623
TU1775496 lncRNA upstream 307548 43911033 ~ 43911239 (-) True G1551725
TU1775673 lncRNA upstream 383044 43986529 ~ 43986759 (-) True G1551892
TU1775674 lncRNA upstream 383340 43986825 ~ 43987035 (-) True G1551893
XM_036952903.1 mRNA downstream 1838 43595536 ~ 43596702 (-) True LOC118941171
XM_036951054.1 mRNA downstream 3362 43584935 ~ 43595178 (-) True LOC118940982
XM_036951053.1 mRNA downstream 13619 43577657 ~ 43584921 (-) True LOC118940981
XM_036951052.1 mRNA downstream 21637 43571589 ~ 43576903 (-) True LOC118940980
XM_036951051.1 mRNA downstream 26982 43567310 ~ 43571558 (-) True LOC118940979
XM_036951056.1 mRNA upstream 839 43604324 ~ 43607758 (-) True LOC118940984
XM_036951057.1 mRNA upstream 4720 43608205 ~ 43610335 (-) True LOC118940985
XM_036951058.1 mRNA upstream 11189 43614674 ~ 43622823 (-) True LOC118940986
XM_036951059.1 mRNA upstream 21278 43624763 ~ 43668196 (-) False LOC118940987
XR_005037491.1 mRNA upstream 158200 43761685 ~ 43762658 (-) True LOC110496830
TU1774438 other downstream 583421 42961990 ~ 43015119 (-) False LOC118936491
TU1774440 other downstream 583421 42961990 ~ 43015119 (-) False LOC118936491
TU1774442 other downstream 583421 42975998 ~ 43015119 (-) False LOC118936491
TU1774436 other downstream 583421 43013202 ~ 43015119 (-) True LOC118936491
TU1774434 other downstream 634510 42961990 ~ 42964030 (-) False LOC118936491
TU1775356 other upstream 27521 43631006 ~ 43632877 (-) True LOC118940987
TU1776616 other upstream 1217278 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 1444195 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 1461649 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 2063876 45667361 ~ 45667740 (-) True G1553544

Expression Profile