RNA id: TU1775356



Basic Information


Item Value
RNA id TU1775356
length 648
RNA type TUCP
GC content 0.46
exon number 2
gene id LOC118940987
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43624763 ~ 43668196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgcagcCCTTACTGGAACCACAACTGAAGCTGATTCTAAAACAActatagcacctacgacaaccacaacaatctCCCCttcgacaactgcagctccaacaactgtagctcctacaacGCCAATTGAAACTGTAGGACCTACCACCATTGTAAGTCCTACGACAAACACAAATGTAGCTCCTACAGCAACCACAACAGCAACTAGTACAACAACTGGAGCTCCAAtgaccactacaactgcagcagctCAAACAACACCAACTGTAGCTGCATCCACAACCACTATTGTTGCCcctatggcaacaacaactgaagCTGCAATAGCAAGCACAACAGAAGCTGCTACGAAAACCACTGCAgctaatataacatctacaactaCAGCTTCTACTACGACAATAATAGCAGATCCTGCGACCACCACAAATGATGCAGCTACTACGACAACAACAGCTCCTACAACTCCAACTGTAGCTTTTTCCACAAGAACAAGTGCAAcccctactgcaaccacaacAGAAGCTTATTCTACAACAACTGTAGAaactacaactaccacaacaacatcccctacgacaactgcagctcctactacaaccaccGGAGCACCTACGGCCACTTCAACAGCAGCagctcttacaacaacaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1775358 lncRNA downstream 123 43630281 ~ 43630883 (-) False LOC118940987
TU1775360 lncRNA downstream 32089 43597439 ~ 43598917 (-) True G1551599
TU1774816 lncRNA downstream 484662 43145762 ~ 43146344 (-) True G1551087
TU1774800 lncRNA downstream 510065 43120322 ~ 43120941 (-) True G1551071
TU1774576 lncRNA downstream 537711 43093093 ~ 43093295 (-) True G1550866
TU1775385 lncRNA upstream 41763 43674640 ~ 43706492 (-) True G1551623
TU1775496 lncRNA upstream 278156 43911033 ~ 43911239 (-) True G1551725
TU1775673 lncRNA upstream 353652 43986529 ~ 43986759 (-) True G1551892
TU1775674 lncRNA upstream 353948 43986825 ~ 43987035 (-) True G1551893
TU1775656 lncRNA upstream 379730 44012607 ~ 44012803 (-) True LOC110496339
XM_036951058.1 mRNA downstream 8183 43614674 ~ 43622823 (-) True LOC118940986
XM_036951057.1 mRNA downstream 20671 43608205 ~ 43610335 (-) True LOC118940985
XM_036951056.1 mRNA downstream 23248 43604324 ~ 43607758 (-) True LOC118940984
XM_036951055.1 mRNA downstream 27521 43598540 ~ 43603485 (-) True LOC118940983
XM_036952903.1 mRNA downstream 34304 43595536 ~ 43596702 (-) True LOC118941171
XR_005037491.1 mRNA upstream 128808 43761685 ~ 43762658 (-) True LOC110496830
XM_036951060.1 mRNA upstream 132246 43765123 ~ 43769387 (-) True LOC118940988
XM_036951061.1 mRNA upstream 139449 43772326 ~ 43780922 (-) True LOC118940989
XM_036951062.1 mRNA upstream 148396 43781273 ~ 43789565 (-) True LOC118940990
XM_036951063.1 mRNA upstream 158398 43791275 ~ 43794053 (-) True LOC118940991
TU1774438 other downstream 615887 42961990 ~ 43015119 (-) False LOC118936491
TU1774440 other downstream 615887 42961990 ~ 43015119 (-) False LOC118936491
TU1774442 other downstream 615887 42975998 ~ 43015119 (-) False LOC118936491
TU1774436 other downstream 615887 43013202 ~ 43015119 (-) True LOC118936491
TU1774450 other downstream 666976 42927413 ~ 42964030 (-) False LOC118936491
TU1776616 other upstream 1187886 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 1414803 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 1432257 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 2034484 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 2155222 45788099 ~ 45792133 (-) False G1553693

Expression Profile