RNA id: XM_036951060.1


Basic Information

Item Value
RNA id XM_036951060.1
length 1518
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC118940988
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43765123 ~ 43769387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAAGCTACGACAACAACCACACCTTCCACTACAGCTACAACTGACGGTCCGACAACAACCACACCTACAACGACAGCTACAACTgaagctcctacgaccactacaacgacaactgcagttcctacgacaactgcagctactacgacaactgcagcacctacgacaactgcagctcctgcgacaactggagcacctactacgacaactgcagcaccctctacgaccactgcagcgcctactacgacaactgtagctcccacaacaactacttctacagctcctacgacaactgcagctcctgcgacaactgcagttcctacgacaactgcagttcctacgacaactgcagcacctactacgacaactgcagcacctacgacaactgcagcacctacgacaactggagcacctactacgacaactgcagcacctactacgaccactgcagcgcctactacgacaactgtagctcccacaacaactacttctgcagctcctacgacaacctcaACTGCAACACCttctacaactgcagcacctacaacCACTATGACTGCAGCaactactacgacaaccacaactgcacctactgctacaaccacaactgcagatcCTACTACAACATTAGTTGTAGTTTCAAGCACTGCAGCAGCTGAACCTGCAACAACTGTAggtcctactacaacaactgtagctcctacaacagctACAACTGCAGCAACTACTACAACTGAAGCTACGACAACAACCACACCTTCCACGACAGCTACAACTGACGGTCCGACAACAACCACACCTACAACGACAGCTACAACTgaagctcctacgaccactacaacgacaactgcagttcctacgacaactgcagctactacaacaactgcagcacccacctacgacaactgcagcaccaaCGACAACTGTAGCTTCTattacgacaactgcagcacctattACGACCACTGCAGCACCTATTACGAaaactgtagctcccacaacaactacttctgcagctcctacgacaacgtCTGCTGCATCACCTtctacaactgcagctcctacaaccacTACGATTGCAACaactactacgacaaccacaacttcACCTACTgcaacaaccacaactgcagatcCTACTACAACATTAGTTGCGCTTATGACAACACCTGCAACGACAATTGCCgctcctacgacaactgcagctcctatgACAACTGCAGCTCATACAACTACAGCTCATACGACAATAACTGTATCTCTTTTTACCACTACAACTGTAGCGCCTACTACAgccacaacagcaacacctacaaATACTGGAGCACCTGCTACAGAAACTACAAttgcacctactacgacaaccactactGCAACTTCTATGATAACTGCAGCTCCTCTGACCAatgcagctcctacgacaaccagaACTTCAGCTTCTACGACGAACACCACCTTAGCTCCTACGACAACAACGACAACTGCAACTCCTATGACAATGACAACTCCAGCACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1775385 lncRNA downstream 58631 43674640 ~ 43706492 (-) True G1551623
TU1775358 lncRNA downstream 134240 43630281 ~ 43630883 (-) False LOC118940987
TU1775360 lncRNA downstream 166206 43597439 ~ 43598917 (-) True G1551599
TU1774816 lncRNA downstream 618779 43145762 ~ 43146344 (-) True G1551087
TU1774800 lncRNA downstream 644182 43120322 ~ 43120941 (-) True G1551071
TU1775496 lncRNA upstream 141646 43911033 ~ 43911239 (-) True G1551725
TU1775673 lncRNA upstream 217142 43986529 ~ 43986759 (-) True G1551892
TU1775674 lncRNA upstream 217438 43986825 ~ 43987035 (-) True G1551893
TU1775656 lncRNA upstream 243220 44012607 ~ 44012803 (-) True LOC110496339
TU1775716 lncRNA upstream 280978 44050365 ~ 44050741 (-) True G1551935
XR_005037491.1 mRNA downstream 2465 43761685 ~ 43762658 (-) True LOC110496830
XM_036951059.1 mRNA downstream 96927 43624763 ~ 43668196 (-) False LOC118940987
XM_036951058.1 mRNA downstream 142300 43614674 ~ 43622823 (-) True LOC118940986
XM_036951057.1 mRNA downstream 154788 43608205 ~ 43610335 (-) True LOC118940985
XM_036951056.1 mRNA downstream 157365 43604324 ~ 43607758 (-) True LOC118940984
XM_036951061.1 mRNA upstream 2939 43772326 ~ 43780922 (-) True LOC118940989
XM_036951062.1 mRNA upstream 11886 43781273 ~ 43789565 (-) True LOC118940990
XM_036951063.1 mRNA upstream 21888 43791275 ~ 43794053 (-) True LOC118940991
XM_036951064.1 mRNA upstream 44562 43813949 ~ 43858805 (-) True LOC118940992
XM_036951065.1 mRNA upstream 90976 43860363 ~ 43890563 (-) True LOC118940993
TU1775356 other downstream 132246 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 750004 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 1051376 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 1278293 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 1295747 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1897974 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 2018712 45788099 ~ 45792133 (-) False G1553693

Expression Profile