RNA id: XM_036951064.1



Basic Information


Item Value
RNA id XM_036951064.1
length 966
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC118940992
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43813949 ~ 43858805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acaaccacagcacctactacgacaactacaactgtagctcctacgaccaccacaactgcagctccaactacaAAAACTGTAGCTTCTATTACCACttcaactgcagcacctacttcaactacaacaactgtagctcttacgaccaccacaactgcagcacctactacgacaacgaCAACACCTACCACGACAACCACAGCAcatactacgacaaccacaactgtagctcctacgacaatcacaactgcagctccaactacaacaactgtagctcctacgaccaccacaactgcagctccaactacaAAAACTGTAGCTTCTAttaccactacaactgcagcacctacttcaactacaacaactgtagctcttacgaccaccacaactgcagcacctactacgacaacgaCAACACCTACCACGACAACCACAGCAcatactacgacaactactaccacaaccacaacacctactatgacaaccacaacacctactacgacaaccacaacacctactacgacaaccacaacacctaccacgacaaccacaacacctaccacgacaaccacaacacctaccacgacaaccacaacacctactacgacaaccacaacagcacctgctacaataactacaactgcagctcttacaacaaccacaacttacAAACGGGCCATGACTGGCCCAGCTGACCCGGGCCAACTgcgcaacgccatctcctcccaaggagcctccATTGTTAGGCACGGGGAATTGCTTCATGGTCTTATGGAGGGGGTCCAAACGTTGAATGAGCGCCATGACCGGACTTTGGACGTGCTGCTGGAGCAATTACACTGGAATTCTGGGGGGCAGCCTGCCATGGTGGTAACCACACCGCCGCTCAGTAACTCAGCGGTTAGCAGCGCCGCCCACCGACCACTCCACCTTCCCGGGAGCCCCGTTTACCTCCCCAGAACGCTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1775385 lncRNA downstream 107457 43674640 ~ 43706492 (-) True G1551623
TU1775358 lncRNA downstream 183066 43630281 ~ 43630883 (-) False LOC118940987
TU1775360 lncRNA downstream 215032 43597439 ~ 43598917 (-) True G1551599
TU1774816 lncRNA downstream 667605 43145762 ~ 43146344 (-) True G1551087
TU1774800 lncRNA downstream 693008 43120322 ~ 43120941 (-) True G1551071
TU1775496 lncRNA upstream 52228 43911033 ~ 43911239 (-) True G1551725
TU1775673 lncRNA upstream 127724 43986529 ~ 43986759 (-) True G1551892
TU1775674 lncRNA upstream 128020 43986825 ~ 43987035 (-) True G1551893
TU1775656 lncRNA upstream 153802 44012607 ~ 44012803 (-) True LOC110496339
TU1775716 lncRNA upstream 191560 44050365 ~ 44050741 (-) True G1551935
XM_036951063.1 mRNA downstream 19896 43791275 ~ 43794053 (-) True LOC118940991
XM_036951062.1 mRNA downstream 24384 43781273 ~ 43789565 (-) True LOC118940990
XM_036951061.1 mRNA downstream 33027 43772326 ~ 43780922 (-) True LOC118940989
XM_036951060.1 mRNA downstream 44562 43765123 ~ 43769387 (-) True LOC118940988
XR_005037491.1 mRNA downstream 51291 43761685 ~ 43762658 (-) True LOC110496830
XM_036951065.1 mRNA upstream 1558 43860363 ~ 43890563 (-) True LOC118940993
XM_036952905.1 mRNA upstream 63311 43922116 ~ 43926474 (-) True LOC118941172
XM_021572160.2 mRNA upstream 93513 43952318 ~ 43973541 (-) True dus3l
XM_036952912.1 mRNA upstream 151207 44010012 ~ 44012683 (-) False LOC110496339
XM_021572163.2 mRNA upstream 151207 44010012 ~ 44012891 (-) False LOC110496339
TU1775356 other downstream 181072 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 798830 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 961958 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 1188875 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 1206329 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1808556 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1929294 45788099 ~ 45792133 (-) False G1553693

Expression Profile