RNA id: XM_036952912.1


Basic Information

Item Value
RNA id XM_036952912.1
length 2236
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110496339
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44010012 ~ 44012891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cTGTAATAGTACACAAGCAAATTCATGTATTTAAAAAGCATGTTCAATGTGGCACAAAGCGTGCACTGTCAATGGGAGAGTAGACCAAATATGTCCGGTAACTTCTTAAGGATCGGTAGTGCATAATTTACAGTAGCTAATGACTAACGTAAGTAAGTAACTGCTTTTAGCAGCGCTATTATTTACACACTACTATCGTTGGAATTAGTTTACAAAAATCCGGATAGTCTGCCGGAAGTTAAGGAACATTAAATTTAAACATTGCCGATTGTCCGTAGGTTTGGTCCTTATTCAGGgggaaattgagaaaaataatCTGTTTAATTTATGTTCTATAAAACGTTCCAAACGTGGGTCTGTTGTAGATTTACCTCCTCTCTGCCTACGTTTGGTAATGAAGTTCCATTAGATGTTTGTCTCCTCCAATGCATATGGATCAAGCTTATAGACAATCGACCGAGTCTGATGTCATGTTTCAACAGTGTTGAATATGACATTAATGCCAGGAGTCCAGGGTCTGCTAGGCCTTCACAGAACCCTTGTACCAGCTTTTAGCCGCTTTGTCTCATCTCCCACCCAGCTGACATCTGTTGGTCTTCCCAGGGGGCTTTGCACCGTCACTGCAACTGTCAGCGACTCAAAGCCTTCAGTGGGGCCTGAGAATGAGTCCTTGCTGGAGAGCTTGACCTTCATGGGGGTGGACGTGAAGATGGTGCGCCAGCGCCAACCGGGAGTGCTTCGCAAGATCATCACCAATGAGCAAGGTCTGGCTCACTTTCTCCATGGCAAAGGCGCCAGCCGCAAAGTGGTGGCCGGCATCATCTCCCGGTACCCACGAGCCATCACTCGCTCGGGTGAGCACTTGGAGCAACGCTGGGCGATGTGGCGGGGTGTCTTCAAGAGCGACAGCGAAATCGTCAGCATTCTGGACCGCTCGCCCGAGTCCTTCTTCCGTTCGAGCGACAACGACAACCTGGAGAAGAACATCGTGTTCCTGGGCTCGCTGGGCCTCAACGCCAAGGACCTCCACCGCCTGCTGACCACAGCGCCACGGACCTTCTCCAACAGTGTCGAGCTCAACCGTCAGATGGTGGAGTTCCTGGAAGATGTGTGCGCCGAGTTGGGTGGAGAGGACCCGGGGCAGTTCGCCAAGGTAGTGATTTCCCGAAACCTCTATATCCTCATCCGCAGCACCAAGAGGGTGAAGGCAAACATTGACTTCCTCAAGGCGACTTTCAAGATGAGTGATCCGGAGCTGCTGGCTCTGTTGCAGGGTGCTGGGGCAGAAATCCTGGACCTCTCTAACGAGTACCTGAAGAGAAACCTCAAGATGCTTCAGGAGAAGCTGGCGTCTCTCGGCTGTCGGAAAGTCGACGTCAAGAAACTGATCGTCTGCTACCCCACTGTGCTGTTCATCGGGTCGGATACGCTGAGTTCAAAACTGGACTGTCTATTAAAGGGAGGGATCACTATGAGGCAGATACTGGAGAAACCTAAAGTCCTGGAGTACAGCACACAGAACATCACAGGGCGACTAGAGGAGCTGCATAAACTTCGGTATGACTTTGAAAAGAACGGCATCAACATTCTGGACTCTAGCCGAAAACGTTTCGACGCCAAGTTGGAAAGACTGGCTCTCTCGTCAGAGGAATGAGTTGTATCAACATTTCGGTTATGCTTAGAATGAATCAGACATTTTTTGGCACTAGATTTTTTCATTGCTACCTGAAGCATAACCTCTACATATCACTGTCCTCCTCCTAAACTATAGGATTTGATTGTGCATAGCTGTAATAAGCAAGGTATACATACGGTAGGTAAAAACATGAGAATCATGTCAGTATCaggaaacatttatttttaatttgaaCCAAAAAGAGTATGTAAAGTAGTGTCATCATATTTGAACTATGATTTAGATGTTTACGTAAGCTAACAAACTGTGTATTGTAGTACTGTGTCAATGTATTTCTCATGATTGATTATGAGGCACCTTATTGAACTTACCAATGGTTTTACAGAACTGTAAACTACCAAGAGGCATCAGTACACTGTTTTCACTGACAGATTCTCAAACGTATTTTTTGCCAGATGAGCTGTCCGATGAGAAATCAGCCAAACTCCTTTCTTCCTAGcttactgtgcattcggaaagtgttcagactcctagactttttacacattttgttacgttacagccttattctaaaattgattaaatacatacaaatcctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1775674 lncRNA downstream 22977 43986825 ~ 43987035 (-) True G1551893
TU1775673 lncRNA downstream 23253 43986529 ~ 43986759 (-) True G1551892
TU1775496 lncRNA downstream 98773 43911033 ~ 43911239 (-) True G1551725
TU1775385 lncRNA downstream 303520 43674640 ~ 43706492 (-) True G1551623
TU1775358 lncRNA downstream 379129 43630281 ~ 43630883 (-) False LOC118940987
TU1775716 lncRNA upstream 37682 44050365 ~ 44050741 (-) True G1551935
TU1775744 lncRNA upstream 75010 44087693 ~ 44093465 (-) True G1551962
TU1775826 lncRNA upstream 188242 44200925 ~ 44201129 (-) True G1552034
TU1775827 lncRNA upstream 190307 44202990 ~ 44203228 (-) True G1552035
TU1776064 lncRNA upstream 197564 44210247 ~ 44210482 (-) True G1552244
XM_021572160.2 mRNA downstream 36471 43952318 ~ 43973541 (-) True dus3l
XM_036952905.1 mRNA downstream 83538 43922116 ~ 43926474 (-) True LOC118941172
XM_036951065.1 mRNA downstream 119449 43860363 ~ 43890563 (-) True LOC118940993
XM_036951064.1 mRNA downstream 151207 43813949 ~ 43858805 (-) True LOC118940992
XM_036951063.1 mRNA downstream 215959 43791275 ~ 43794053 (-) True LOC118940991
XM_021572174.2 mRNA upstream 146160 44158843 ~ 44165139 (-) True LOC110496341
XM_021572175.2 mRNA upstream 157286 44169969 ~ 44183141 (-) True LOC110496342
XM_021572176.2 mRNA upstream 173205 44185888 ~ 44188508 (-) True LOC110496343
XM_021572178.2 mRNA upstream 192736 44205419 ~ 44210089 (-) True LOC110496344
trnal-uaa-4 mRNA upstream 224580 44237263 ~ 44237345 (-) True trnal-uaa-4
TU1775356 other downstream 377135 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 994893 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 808080 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 1034997 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 1052451 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1654678 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1775416 45788099 ~ 45792133 (-) False G1553693

Expression Profile