RNA id: XM_021572174.2


Basic Information

Item Value
RNA id XM_021572174.2
length 3507
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110496341
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44158843 ~ 44165139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGTAGAGATGCTGGGTTACAGTACTAGCCGTCACTTATCATTTAGCGTTATAGGGGAATACACTATGATATTGGAATCAAGAAGGATTTGACTGTGCTTTTGGGAACACTATTTTCCGTTTATACAAAGCCTCGTGCCTTGTAGAAAACCGATTTAGATGGTGTAGAAGTGacaattgtttttatttgtttcaaACGCAAGGAGTCTGTCGCAGTGGCCTGTAATATTTTACAACGGATTGAAACAAACAGAAGACGTGACAATGGCTATGCATTTATATCAAGTTAGTAGTATGCTACTAGAAAATACCGTCGGGAAAATTAGTGACAACGTGACATCGGTGGTTCTTGCAGTGTTTGTGATCACCCTAACTTTGGGATATATTTCTAAACTGGTGCTCAAACAGTCACAATCTTCTTCCGACGAAGACAAGAAATACCCACCATACATACCTTCTAGCATTCCATTTCTGGGTCATGCCATAGCATTCGGGAAAAGTCCCATTGAATTTCTGGAGGATGCATATGAAAAGTATGGGCCCGTTGTCAGCTTTACCATGGTGGGCAAAACCTTTACCTACCTTCTGGGTAGTGAGGCAGCCACACTGATGTTCAACAGCAAGAACGAAGATCTCAATGCAGAGGATGTCTATTCTCGATTGACCACACCAGTTTTTGGCAAAGGGGTTGCATACGATGTACCTAACCATATTTTCCTGGAACAGAAGAAGATGTTTAAGACAGGACTGAACATTGCCCATTTCAAACAGCACGTTGAAATCATCGAGGAGGAAACTAAAGAGTACTTTTCAAGATGGGGAGACAGCGGGGAAGAAAaccTGTTTGAGGCCCTGTCGGAGCTGATCATCCTGACGGCCAGTGCCTGTCTGCATGGGAAGGAGATCCGCAGCATGTTGGACGAGAAGGTGGCCCAGCTCTACGCAGACCTGGACGGGGGCTTCAGCCATGCTGCCTGGCTGCTGCCCGGCTGGCTGCCGCTGCCTAGTTTCAGACGAAGGGACAGAGCACACAGGGAGATCAAGAACATCTTCTACAAAGTCACCCAGAAACGCAGAAGCTCTGGAGAGAAAGTGGACGACATGCTGCAGACCCTCATAGATGCCACCTACAAGGATGGTCGGCCCCTGAATGATGATGAGATAGCAGGCATGCTGATTGGTCTACTCCTGGCTGGACAGCACACATCCTCTACTACTAGTTCCTGGTTGGGCTTCTTTCTGGGCAAAGACAAGGCCCTACAGGACCGCTGCTACGCTGAACAGAAAACAGCATGTGGAGAAGACCTGCCCCCACTCAACTTTGACCAGCTGAAGGACCTGACTTTGTTGGACCGCTGTTTGAAAGAGACCCTCCGACTACGTCCACCCATCATGACCATGATGAGAATGGCACGCTCTCCTCAGACTGCAGCAGGCTACACCATCCCAGCCGGCCACCAGGTGTGCGTGTCCCCGACGGTCAACCACCGTCTGCAGGACACCTGGACAGAGAGGATGGAGTTCAGGCCTGACCGCTACCTCAATGATAACCCTGCCGCAGTTGAGAAATTTGCCTATGTGCCCTTTGGAGCCGGCCGTCACCGCTGCATTGGGGAGAACTTTGCCTACGTTCAGATCAAGACCATCTGGTCTACCATGCTGCGCCTTTTCGAATTTGACCTGGTCGATGGCTACTTCCCCACAATCAACTACACAACCATGATCCACACCCCACACAACCCCGTCATCAGATACAAGAGGAGGCAACACTAAGAGACACTGAGCGCAAAACACAGCAGAGAAAAGAGGTTACACCCAGAAGAGCAAGGCTTTGTCCAAAATGGCGTCCTATTCTATAGTGTAGTCATTTTTGTCCAGCGCGTCATAGGGGTGcgaccaaaagtagtgcactatattggaaaTAGGGAGCCATTTCAGTTTTCCCCCAACAAACAACCTAACTTACCTTAAATGGTTTGATTTAGAGGAAATTATTGTACTTCAATTTAGGAACTGTGCAAGTTAATGCACAGAGTTCTGGCTGGAAATTAAACAACTTTAATTTGTGTTTCCCCCACCTTAGGTGTGCCTTGTTGTTTAGTTGTTAGAATGTACACTGAATCAGTTTGTTTCTTCACTAACGGCTTCTCTGTAGTAGTCTAATCCCAAATTAGATCGGTTTGTGCAGTCATGCCAATGGCCATAGGATTTGGCTACagtatacagcacaaacagatctggccAAAAGCTTCATCTTTTGTCCATTCTATTTCAACTGTCATGGTAAtacatatacagtgagctccaaaagtattgggacagtgacaatgttttgttgttgttttggctctgaaaCACTACAAACAATACAATAactatgatatttatgcctctgtaactttgaggttaaagtgcagacttcCAGCTTTAATTTGGTCCCCccaattttaggggaccaaaagtattgggagaaATTCTCGTGTGTTTTAAAGTAGTCGAAAGTTTAGTATTAGCATGCAAAGATTACATTAAGCTTGTGACTGCAAACTTGTtagatgcacttgctaataattctggttgtgtttcagatcattttgtgcccaatagaaatgaatggtagataatgtattgtcattttggagtcacattTATTGTAAATGAAAAcagaatgtttctaaacacttatacattaatgtggatgctaacaTGATTACAGATCATACTGAATCAATCATGAATAATCAGTGAGACAGTtaagaggcataaatatcatagaatcatttcaaatccaaagtgcagagccaaaacaacaaatgtgtcactgtcccaatacgtTTGGTGCTTAGCGTAGGCTTTCAAGCTTCCACTGTGTGAAATGTGATAAGTCTCCTGTGTGTATGAGTGACACTATTACAGTAAGGATGGATATTACTGGAGTAAAAAGCACTGCCTTTTACAGAGCAGTGAGAAATAGTCAAACCACTGATCCTTATCCATCGACTCATAGAGATCAGTGATCAAACTGACGAGCACTGACTTTGTATGTACTACTGTCCATTCATATAATTGTACAAAGATAGAGAACCTGGGCTGGGTCAAACAAAGAAAACAGACTTGAAACATGGAGGGACAACCTGCACTTGCTCAATGAGACAAATTTCAGTTTTCTGTTGTGTGCCCTAATAAACACGACTAAGTGTATTGGGTGGGAATGTTGGACGGTCAGGGTAATATGGGTCAGTTTGACCCATGTAGTGCCTTGACAATGGAAAATGATTAGTCCATGTTGTTTTTGATTGATTTGACTATTTGAAGCCTAGTGTTGTGAACATAGGTCcgttgtatatatttatatttaaaaaaaaatctaaatatcatGTTCAATTTGTCTTCACACCATAATTTTATTGACTGTACATCTCCCCCATACCAGATTCACATTTTAGCTCAAGTTCTATTTTGTTTTACAACTGTTAGAACTAATTAAACGTGTACCTGTAAAATCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K05917 CYP51; sterol 14alpha-demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1775744 lncRNA downstream 65378 44087693 ~ 44093465 (-) True G1551962
TU1775716 lncRNA downstream 108102 44050365 ~ 44050741 (-) True G1551935
TU1775656 lncRNA downstream 146040 44012607 ~ 44012803 (-) True LOC110496339
TU1775674 lncRNA downstream 171808 43986825 ~ 43987035 (-) True G1551893
TU1775673 lncRNA downstream 172084 43986529 ~ 43986759 (-) True G1551892
TU1775826 lncRNA upstream 35786 44200925 ~ 44201129 (-) True G1552034
TU1775827 lncRNA upstream 37851 44202990 ~ 44203228 (-) True G1552035
TU1776064 lncRNA upstream 45108 44210247 ~ 44210482 (-) True G1552244
TU1776065 lncRNA upstream 45947 44211086 ~ 44211423 (-) True G1552245
TU1776063 lncRNA upstream 64791 44229930 ~ 44232989 (-) True G1552243
XM_021572163.2 mRNA downstream 145952 44010012 ~ 44012891 (-) False LOC110496339
XM_036952912.1 mRNA downstream 146160 44010012 ~ 44012683 (-) False LOC110496339
XM_021572160.2 mRNA downstream 185302 43952318 ~ 43973541 (-) True dus3l
XM_036952905.1 mRNA downstream 232369 43922116 ~ 43926474 (-) True LOC118941172
XM_036951065.1 mRNA downstream 268280 43860363 ~ 43890563 (-) True LOC118940993
XM_021572175.2 mRNA upstream 4830 44169969 ~ 44183141 (-) True LOC110496342
XM_021572176.2 mRNA upstream 20749 44185888 ~ 44188508 (-) True LOC110496343
XM_021572178.2 mRNA upstream 40280 44205419 ~ 44210089 (-) True LOC110496344
trnal-uaa-4 mRNA upstream 72124 44237263 ~ 44237345 (-) True trnal-uaa-4
trnal-uaa-5 mRNA upstream 72923 44238062 ~ 44238144 (-) True trnal-uaa-5
TU1775356 other downstream 525966 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1143724 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 655624 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 882541 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 899995 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1502222 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1622960 45788099 ~ 45792133 (-) False G1553693

Expression Profile