RNA id: XM_021572176.2


Basic Information

Item Value
RNA id XM_021572176.2
length 1620
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110496343
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44185888 ~ 44188508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCATCCAATCAGCACAGCCCGAACAAGAGTCATGTTTCCTCGTTCCTCTGTCCTTATATGGCAGAAGTAGGCTGGGACTCCAGGAAAATGGTGGCTTGGAAATACTGACAGCTTGTGTGAAGAGAAGTATAACAATAGCTTGAATTCAGAAGTCAGAAGCTCACAGCGATGGCTGACGCCGGGCAAATCAGAAAGACAGCGGTCAAGGTGCTGGGCTGCGTGGAGAAAGTATCCTCTTTCGCCTCGTCCATCAATCCCCTCTTCGGCATCGTCTCCTCCCTGGTGGGGGTGGTGCGCATAGGCCTGGTGGGCGATGAGGCGCACGCCCTGGACAAGGACTTCCAGGTGGTGCACGGCAAGCTGGAGAGCATCTCTGCGAAGAACCGCCAGTGCCTGCGGCAGATTCGTGTGGACGAGGTCAATGAGACATTTGGTAAGTACGAGGAGTACATCAAGCACCAGTACGCCGCCTTTAGCTCCATGGTGGCGTTGGTGAGGAAGGACCCAGAGGGAGCGCGGCGCCACATGGCCAAATTCGAGTGGGTCTATGAGAAGGACAAGAGCGACCTGAGCCTGGACGTGTACTACCGGGGAGTAATGGGCACCGGGTCGGTGTTCGGAAGGCCCCTGCTGAAGGTGTACCTGGAGCACTGCAACGGAGACCGCAGGGTCATGGAGCACTGGTGCTCCCAGGTGGGACACCTGTTCCACATCGGCCTGATCGCCCTCATGGCCTACACAGCGGTGACAGAGGACGACGAGGACGAGGTGCGAGAGAAGTGGACCAAGCGTGTGGAGGACATCCAAGCCAAGATGCAGGAGGTTTTGAGTCAGTGCAAAGAGTAGGAGAGGAGTCTTCCCTAAAGCTtggggaaggggagaggtgggggCCCTGTCCAGAAATTACCCTTACTCCCAGTCCTGGAGTGCTACCGGGTGTGTAGTATGTCCTGGGTGTTCCTACCCTGCTCTAATATATCTGATTCTACTAATCAGCTGCTGATCATGGGCCTAATTAGCTGAACCAGATATGTTAGAGTAGGGATGGAATAAAAGCCTGCAGACCCAGTAGCTATTCAGTAAAAAGTCACCCCTGCTCTAACTCATTTTTAGAACTGGATAGGTACAAGCAATATGGCTGTAGCTCCACCTTGCTCTATGAGAGGCAAGGTGGATTTTTTTGCCAAACATTTCTTAGTCCTGTCCAATTTACTTTGATCAACACAAGTGCCAAggggtaggggctaggggttgattCTTGACAGGGACAACGATTTGAGGGGAGGTTAGGTGGGTGTGAAGTGGAGTTTGGTCGTTAAAACTGTGGAGAAGTGGTTCGTTCCCACTTTCTCAAGACCAGACTCATTCAAGTGGACCAAGtaaagcaaggaaatcatgtATTATGAATAGATGGGGAACTAAATTCACAGTAAAAGCAATCAAATGTATTGTCATTTATTTGGGTCAACTGAACTCTGTTGTTGTGGCAATAGTTCCTAATTTGAACTTGTGATCATACAGCTGCCTTATATTAGCCTACCAGTCAATACATTCTCTGACTGTCcgttaatgttttatacactgtcTTCAATAAACAAGTCTAAATTATGACCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1775744 lncRNA downstream 92423 44087693 ~ 44093465 (-) True G1551962
TU1775716 lncRNA downstream 135147 44050365 ~ 44050741 (-) True G1551935
TU1775656 lncRNA downstream 173085 44012607 ~ 44012803 (-) True LOC110496339
TU1775674 lncRNA downstream 198853 43986825 ~ 43987035 (-) True G1551893
TU1775673 lncRNA downstream 199129 43986529 ~ 43986759 (-) True G1551892
TU1775826 lncRNA upstream 12417 44200925 ~ 44201129 (-) True G1552034
TU1775827 lncRNA upstream 14482 44202990 ~ 44203228 (-) True G1552035
TU1776064 lncRNA upstream 21739 44210247 ~ 44210482 (-) True G1552244
TU1776065 lncRNA upstream 22578 44211086 ~ 44211423 (-) True G1552245
TU1776063 lncRNA upstream 41422 44229930 ~ 44232989 (-) True G1552243
XM_021572175.2 mRNA downstream 2747 44169969 ~ 44183141 (-) True LOC110496342
XM_021572174.2 mRNA downstream 20749 44158843 ~ 44165139 (-) True LOC110496341
XM_021572163.2 mRNA downstream 172997 44010012 ~ 44012891 (-) False LOC110496339
XM_036952912.1 mRNA downstream 173205 44010012 ~ 44012683 (-) False LOC110496339
XM_021572160.2 mRNA downstream 212347 43952318 ~ 43973541 (-) True dus3l
XM_021572178.2 mRNA upstream 16911 44205419 ~ 44210089 (-) True LOC110496344
trnal-uaa-4 mRNA upstream 48755 44237263 ~ 44237345 (-) True trnal-uaa-4
trnal-uaa-5 mRNA upstream 49554 44238062 ~ 44238144 (-) True trnal-uaa-5
trnal-uaa-6 mRNA upstream 50375 44238883 ~ 44238965 (-) True trnal-uaa-6
trnal-uaa-7 mRNA upstream 51173 44239681 ~ 44239763 (-) True trnal-uaa-7
TU1775356 other downstream 553011 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1170769 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 632255 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 859172 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 876626 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1478853 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1599591 45788099 ~ 45792133 (-) False G1553693

Expression Profile