RNA id: XM_021572178.2


Basic Information

Item Value
RNA id XM_021572178.2
length 2828
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110496344
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44205419 ~ 44210089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCAGCTTGAAACTGAATTTCCTGAAGTCCCACACGGAGATAAAAGTCATCAATGTCAGAGGACTGGGGTTGGAATGGCGAGAAGAAGTGAGGCAGAAAGAAGAGTGCAAGGTGAAAACCCCAACCTACTGTGAAATACAAGCCTGAGTACTTTCTCCTTTGGATCAAGTACAGGAGAAAAAAATGCATGTTATGTGCCTGAAAACCCTGAGTAGTcttgctggggatcagaaatgtcctgtGTGAGTGAGACAGATTGACAATATGTAACAAAGCGTCTCGTCTCCCGGAAAACCACAAGAAGAAGAAGGTAGATTTGCGTCGAAGCTGCGCAATAAGTAGCAGCTTGAACACTTCTGTTTTGCACGCATCTATCCATGAATGGCATTAGAGACCCAAAAAGGAAATGCTAGCAATTGCTAATGTTATTGGATAGAAATAGCTATTTTGGTGGAGGAATATGGGGTATTGACTAAATCGATTGCATGATATTAAATGTAACGGTAAACCACAATTAGCTTAACGTTTACATAAAAATTCTGTTAAAACGACCTGCTGAGGCCTTGTTAGCTTCGAGTCAATCAATCCTCGGCCTGTTTGAAACATTACCCTGCAGTGTGGCTCGACTTGACTTGAGCCTCGCTAGCCTTTGGCAAGCCAGTTGTTTTTAAATTCAATTTTAAAGCTAGCAATGAAGTTGGTCCAATTTTAAATGGTTGTCCACAATTTAATTGTTCTCATGCAATACGTCTCATATACTTTCCTGGCCAAACAATTGTAGCTAGCTATCGTGAGCTTGGAAAGTGGGTCGTGGGTGCAGCTGTAGCTAGTTAGCCATATCTGTATTTACCCGCTACTTATGCGAACAAGCTGCTGCAGAAACATCGATAATGTCTTTGGTAGCGTATGCTAGCAGTGATGACAGTGATTCAGAAACATCTAGTTCCATCATCCCGGGGAGCAAACCCGGGGGGCTTTTCGCACGCCTTCCTGCCCCAAAAATATCTGCCTCAGAGGCACTAGGAAACGTGCGACCAAGCAAAGGGGCAACACACGCATCATCACGGAACACTGTGTCAAGCGATGGCGACGAGGACTCCGTTACCCGTTCTCATGCATTTAAAGGAGGGTTGCTTTTCGATTTACCTAAGCCGAAGAAGCGAACAGAGCCTGTCAAAATCACTATACCTGAGATAAAAAGAGGGGATTCTGACTCTGATGAAGATGAACCAAGGAGAAAGAAATCCCTGCCCCAGGGCCCTGGCACTGGCCTTTCCTCCCTCCTGCCTCAGCCCAAAAATGTGGTTGTGAAGGAGATGCAGAGGGCCCTAGTGCCTCACACCCTCACCAAGCGGCCGGAGCCAAAGAAAACCACAAAGCCCTCTTTAGGGTCCTCCCAGGGCCACGCCAGTGCTAACGCATCCCCCTCCGCTATCAAAGCAGCAGCCAAGTCGGCTGCCCTGCAACTAGCGAGGCAGATAGCTGCTGAGGAAAGTGACGAGGAACTGGCCCCAGAGAACTACTTCTCCCTGGGAGAGAGCTCCAAACCTCTCCCCGCTGTGATCCCCAGCCTGAACCCGGAGCCTGTCCTCACCTCAGGCCTACTACCCGCTCCTGCAAGCATACAGCGTGGTACCTTCCAGTCAGACGCTCCTCTGGACTTCAGTGCGAACCAAGAGGGAGCTTGGGGAGGTCAACAGCTAGGGGCGTACCAACAGCCCTCGGCAGAGCCTCAGGGCTACTACAACGAGGCTTACTACCAGGATCCTGAGTCTGACCCAGCGTTGCCTGAGCCAGAGCAAACTGGTTCCTCCGCCCTGTTTGATGATGAAGCGTTCATGAGGCTGCAGGGGAAGAGGAACAGGGGCAAGGAAGAGGTGAAGTTCCTGGAGATCAAGGGAGATGACCAGCTGAGTGGCAACCAGCAGTGGATGACCAAGAGCATGACTGAGGAGAAGCAGGAGCGCAAGTCCTTCAGCAAGAAAAAGGGAGACCAACCCACAGGGCAACAGCGACGCAAGCACCAGATCACATACCTCATCCACCAGGCAAAGGAGCGAGAGCTGGAGCTGAAGAACAGCTGGGCCGACAACAAGCTGACTCGCCGGCAAACGCAGGCAAAATACGGCTTCTAAGAACCGTAACAGGAGGCTTGGTGGCATACATAGCCCTCCCCCTGAAGATTTGAGTAGTACAGTCCACAAGGTTTCCTCAACAACGCGGGTCATACTATACCCTTGCAGTGGGGGAGGGGTTACACACCTCATAGACCCATCCTTGGAGATGCTAGCACTGACTTTCTTTTTTGTTCACCCTTATTTGTTGGCCTCCCTGGATTTATGATACTTAAAACATTTCTGATTTAAACCATCATTTTGGTGGGACTATTTTATATTATGTTGGTTCTTGGCTGCATAAGAAATCACATTGTTAAGACACAATATGGTTTCCTGGGAAATACTGTTGAAATGCAATTTCATGTGGTGGTATTTTTCATATTACACCTTGAACCACCAATGATCAATAGTCTGAGAATAAGAGGAACGTTTCCCATGTGGTGTCGATATTTTCTTCATCTTGTACGTTTCCAAGGGTGGGACAGTGACCTGTTCTTAAATCATGTCAATCCAACCCTAAGCTTTCCCTGGGTTTTTAGATGTTAGAAAACACATTTGGTGGTCTTGTTGGAATTGCCCTGTGGTGGCGATGCTTCAACCTGACCAGTTTGGAATATGTCTATTGGATTTTGGGGGAGAGTTGGTATCTTTTTAAAGGAGCCAGAAACTCCTACTGTCATCTGTGAATAAACATGATCATATACAGTGAT

Function

GO: NA

KEGG:

id description
K13105 PRCC; proline-rich protein PRCC

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1775827 lncRNA downstream 2191 44202990 ~ 44203228 (-) True G1552035
TU1775826 lncRNA downstream 4290 44200925 ~ 44201129 (-) True G1552034
TU1775744 lncRNA downstream 111954 44087693 ~ 44093465 (-) True G1551962
TU1775716 lncRNA downstream 154678 44050365 ~ 44050741 (-) True G1551935
TU1775656 lncRNA downstream 192616 44012607 ~ 44012803 (-) True LOC110496339
TU1776064 lncRNA upstream 158 44210247 ~ 44210482 (-) True G1552244
TU1776065 lncRNA upstream 997 44211086 ~ 44211423 (-) True G1552245
TU1776063 lncRNA upstream 19841 44229930 ~ 44232989 (-) True G1552243
TU1776075 lncRNA upstream 23435 44233524 ~ 44233769 (-) True G1552255
TU1776087 lncRNA upstream 48511 44258600 ~ 44261253 (-) False trnal-uaa-28
XM_021572176.2 mRNA downstream 16911 44185888 ~ 44188508 (-) True LOC110496343
XM_021572175.2 mRNA downstream 22278 44169969 ~ 44183141 (-) True LOC110496342
XM_021572174.2 mRNA downstream 40280 44158843 ~ 44165139 (-) True LOC110496341
XM_021572163.2 mRNA downstream 192528 44010012 ~ 44012891 (-) False LOC110496339
XM_036952912.1 mRNA downstream 192736 44010012 ~ 44012683 (-) False LOC110496339
trnal-uaa-4 mRNA upstream 27174 44237263 ~ 44237345 (-) True trnal-uaa-4
trnal-uaa-5 mRNA upstream 27973 44238062 ~ 44238144 (-) True trnal-uaa-5
trnal-uaa-6 mRNA upstream 28794 44238883 ~ 44238965 (-) True trnal-uaa-6
trnal-uaa-7 mRNA upstream 29592 44239681 ~ 44239763 (-) True trnal-uaa-7
trnal-uaa-8 mRNA upstream 30413 44240502 ~ 44240584 (-) True trnal-uaa-8
TU1775356 other downstream 572542 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1190300 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 610674 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 837591 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 855045 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1457272 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1578010 45788099 ~ 45792133 (-) False G1553693

Expression Profile