RNA id: trnal-uaa-5



Basic Information


Item Value
RNA id trnal-uaa-5
length 83
RNA type mRNA
GC content 0.54
exon number 1
gene id trnal-uaa-5
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44238062 ~ 44238144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCAGGATGGCCgagaggttaaggcgttggacttaaGATCCAATGGACATATGTCCTCGTGGGTTCGAACCCCACTCCTGGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1776075 lncRNA downstream 4293 44233524 ~ 44233769 (-) True G1552255
TU1776063 lncRNA downstream 5073 44229930 ~ 44232989 (-) True G1552243
TU1776065 lncRNA downstream 26639 44211086 ~ 44211423 (-) True G1552245
TU1776064 lncRNA downstream 27580 44210247 ~ 44210482 (-) True G1552244
TU1775827 lncRNA downstream 34834 44202990 ~ 44203228 (-) True G1552035
TU1776087 lncRNA upstream 20456 44258600 ~ 44261253 (-) False trnal-uaa-28
TU1776086 lncRNA upstream 22812 44260956 ~ 44264051 (-) True trnal-uaa-28
TU1776096 lncRNA upstream 37461 44275605 ~ 44276650 (-) True trnal-uaa-48
TU1776156 lncRNA upstream 146094 44384238 ~ 44384491 (-) True G1552331
TU1776173 lncRNA upstream 172544 44410688 ~ 44411062 (-) True G1552348
trnal-uaa-4 mRNA downstream 717 44237263 ~ 44237345 (-) True trnal-uaa-4
XM_021572178.2 mRNA downstream 27973 44205419 ~ 44210089 (-) True LOC110496344
XM_021572176.2 mRNA downstream 49554 44185888 ~ 44188508 (-) True LOC110496343
XM_021572175.2 mRNA downstream 54921 44169969 ~ 44183141 (-) True LOC110496342
XM_021572174.2 mRNA downstream 72923 44158843 ~ 44165139 (-) True LOC110496341
trnal-uaa-6 mRNA upstream 739 44238883 ~ 44238965 (-) True trnal-uaa-6
trnal-uaa-7 mRNA upstream 1537 44239681 ~ 44239763 (-) True trnal-uaa-7
trnal-uaa-8 mRNA upstream 2358 44240502 ~ 44240584 (-) True trnal-uaa-8
trnal-uaa-9 mRNA upstream 3157 44241301 ~ 44241383 (-) True trnal-uaa-9
trnal-uaa-10 mRNA upstream 3978 44242122 ~ 44242204 (-) True trnal-uaa-10
TU1775356 other downstream 605185 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1222943 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 582619 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 809536 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 826990 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1429217 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1549955 45788099 ~ 45792133 (-) False G1553693