RNA id: trnal-uaa-43


Basic Information

Item Value
RNA id trnal-uaa-43
length 83
RNA type mRNA
GC content 0.52
exon number 1
gene id trnal-uaa-43
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44272158 ~ 44272240 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGGATGGCCgagaggttaaggcgttggacttaaGATCCAATGGACATATGTCCTCGTGGGTTAGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1776086 lncRNA downstream 8107 44260956 ~ 44264051 (-) True trnal-uaa-28
TU1776087 lncRNA downstream 10905 44258600 ~ 44261253 (-) False trnal-uaa-28
TU1776075 lncRNA downstream 38389 44233524 ~ 44233769 (-) True G1552255
TU1776063 lncRNA downstream 39169 44229930 ~ 44232989 (-) True G1552243
TU1776065 lncRNA downstream 60735 44211086 ~ 44211423 (-) True G1552245
TU1776096 lncRNA upstream 3365 44275605 ~ 44276650 (-) True trnal-uaa-48
TU1776156 lncRNA upstream 111998 44384238 ~ 44384491 (-) True G1552331
TU1776173 lncRNA upstream 138448 44410688 ~ 44411062 (-) True G1552348
TU1776178 lncRNA upstream 148443 44420683 ~ 44420951 (-) True G1552353
TU1776183 lncRNA upstream 155718 44427958 ~ 44428171 (-) True G1552358
trnal-uaa-42 mRNA downstream 738 44271338 ~ 44271420 (-) True trnal-uaa-42
trnal-uaa-41 mRNA downstream 1558 44270518 ~ 44270600 (-) True trnal-uaa-41
trnal-uaa-40 mRNA downstream 2378 44269698 ~ 44269780 (-) True trnal-uaa-40
trnal-uaa-39 mRNA downstream 3189 44268887 ~ 44268969 (-) True trnal-uaa-39
trnal-uaa-38 mRNA downstream 4010 44268066 ~ 44268148 (-) True trnal-uaa-38
trnal-uaa-44 mRNA upstream 738 44272978 ~ 44273060 (-) True trnal-uaa-44
trnal-uaa-45 mRNA upstream 1558 44273798 ~ 44273880 (-) True trnal-uaa-45
trnal-uaa-46 mRNA upstream 2327 44274567 ~ 44274649 (-) True trnal-uaa-46
trnal-uaa-47 mRNA upstream 3148 44275388 ~ 44275470 (-) True trnal-uaa-47
trnal-uaa-48 mRNA upstream 3968 44276208 ~ 44276290 (-) False trnal-uaa-48
TU1775356 other downstream 639281 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1257039 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 548523 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 775440 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 792894 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1395121 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1515859 45788099 ~ 45792133 (-) False G1553693