RNA id: trnal-uaa-49


Basic Information

Item Value
RNA id trnal-uaa-49
length 83
RNA type mRNA
GC content 0.53
exon number 1
gene id trnal-uaa-49
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44277018 ~ 44277100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGGATGGGCgagaggttaaggcgttggacttaaGATCCAATGGACATATGTCCTCGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1776096 lncRNA downstream 368 44275605 ~ 44276650 (-) True trnal-uaa-48
TU1776086 lncRNA downstream 12967 44260956 ~ 44264051 (-) True trnal-uaa-28
TU1776087 lncRNA downstream 15765 44258600 ~ 44261253 (-) False trnal-uaa-28
TU1776075 lncRNA downstream 43249 44233524 ~ 44233769 (-) True G1552255
TU1776063 lncRNA downstream 44029 44229930 ~ 44232989 (-) True G1552243
TU1776156 lncRNA upstream 107138 44384238 ~ 44384491 (-) True G1552331
TU1776173 lncRNA upstream 133588 44410688 ~ 44411062 (-) True G1552348
TU1776178 lncRNA upstream 143583 44420683 ~ 44420951 (-) True G1552353
TU1776183 lncRNA upstream 150858 44427958 ~ 44428171 (-) True G1552358
TU1776185 lncRNA upstream 157380 44434480 ~ 44434739 (-) True G1552360
trnal-uaa-48 mRNA downstream 728 44276208 ~ 44276290 (-) False trnal-uaa-48
trnal-uaa-47 mRNA downstream 1548 44275388 ~ 44275470 (-) True trnal-uaa-47
trnal-uaa-46 mRNA downstream 2369 44274567 ~ 44274649 (-) True trnal-uaa-46
trnal-uaa-45 mRNA downstream 3138 44273798 ~ 44273880 (-) True trnal-uaa-45
trnal-uaa-44 mRNA downstream 3958 44272978 ~ 44273060 (-) True trnal-uaa-44
trnal-uaa-50 mRNA upstream 728 44277828 ~ 44277910 (-) True trnal-uaa-50
trnal-uaa-51 mRNA upstream 1548 44278648 ~ 44278730 (-) True trnal-uaa-51
trnal-uaa-52 mRNA upstream 2368 44279468 ~ 44279550 (-) True trnal-uaa-52
trnal-uaa-53 mRNA upstream 3178 44280278 ~ 44280360 (-) True trnal-uaa-53
trnal-uaa-54 mRNA upstream 3998 44281098 ~ 44281180 (-) True trnal-uaa-54
TU1775356 other downstream 644141 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1261899 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 543663 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 770580 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 788034 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1390261 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1510999 45788099 ~ 45792133 (-) False G1553693