RNA id: XM_036952922.1


Basic Information

Item Value
RNA id XM_036952922.1
length 1623
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110496350
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44477196 ~ 44486727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACATTCAAGGCCGACGGAACACACGTTTACTCCAGTTGAAAACATCCGGCAGTCTGCACGTGTGGATTTATTCCTAAAATGTTGGATGTTCTACAGTATAAGCTATATGTGTCAAGAGGAAAAGCAGCATATGTATTATAGCCTGCAGTTTATTAAAAGGCTCAACCTGCAAGCTTAATCGTTAGCTTCATCGCTATCAAACCATTTAGCTACAGACTCATCACCATGGCTGGAAGAGGCAGGGGTCGTGGAAGGGGTCAGATGACCTTCAACCTGGAGGATTTGGGCATAGGAAGGGGAGACAGCCTGCCCCCCACCACCTTTAAGCCCTCACCCCTCTTCCCTCCCATGCCAGTCCAGCCTGTGCCCctgcagacaggagaggaggtggagtacATGCTGGCTCTGAAACAGGAGCTGAGGGCCGCCAACAAGACCCTGCCCTTCTACATCAGACGGGCCGCTCCCAAAAGAGatgttgatCGCTACTCTGATAAGTACCAGAGTGGAGATCCCAAGGACAGTGCCATCGAGTGGAGCCCAGTGTTGGTATATGTCCAGCAGATGGTGCCAGACAAGTCCATTTCTGACTGGAGCAGATTACCTAAAGAGCTTTGCATTAAAGTGAGGAAGCCTCTGGCTAAAAGACATCCACCCCAAGTTAAACAGCCAAAGAAACCTCTTGTGGGAAAAGAGGAGATTCTCACCAAGCTGGAGACTCTCGAAAAGAACGAAGAGGCGGTGAActctgaggaagaggaagacgggGAGAAAAAGAAGACGAACGAGGAAGAAGAACAGCCAGAGGAAGAGGACTACGAGGAAGACTTTGAAGAGGATACCGACTACATCATGTCTTACTTTGACAACGGAGAGGAGTTTGGAGGGGACAGCGACGACAACATGGACGAAGCTACTTACTGAGAGACCGTGCGAGTGCTGATAACACCAAATAGACTAGAAGAGGAGGCCTTAAGTAATCGTCCCCGTGGACGCAGTTACAGTATTTTAATTACTTGTGGAGTCACTGGCCATGGTAACAGACATTGAAGGCCTGCTGCTATTCAGCCATGACAGGTATAGTCTAGAACATGGAAAGAACAATATGCTGCTGTCTGATAACCTAGGTCCAGGACATGGAAGGTGGTGACTGCTGTTGGAAACAGTTGCTCAATGTAGATGTCTAGAGCAAATACTCAGACTTGTTGTATGTGGTGATTTAAAGTCCCAAAGACACTAACTAGTCATGCTGACTGTTCCCCTTTCTTCAGCTATGTTGAGGTAGTAATGGGAGCTGATTTATTTACAGGCCATTGTGGCCTTTTAATAACTTTAATAATAGTTTTTAAGGTTTTAATTAACAGATCATGTGCAATTGTAGTGATAGGGTTTTTAGAGTAACGACATGTTTTAGAGAAAGgtaatttatttaatctttttttttttaagtgtataCAACAATCAAAGTTTTTAATTACAGTTTTCAATGTCTTAGCTAATCGAAAAATGACCTTTTGTtaattttaaatattttatttctgtAATGTGACATTTCTGTTATGCGAGTTGAACATTTGAAAGTGTTGAATTTTATTctctaaatacattttaaagaACCCAAA

Function

GO:

id name namespace
GO:0032774 RNA biosynthetic process biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function

KEGG:

id description
K03024 RPC7, POLR3G; DNA-directed RNA polymerase III subunit RPC7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1776197 lncRNA downstream 18819 44458022 ~ 44458377 (-) True G1552372
TU1776185 lncRNA downstream 42457 44434480 ~ 44434739 (-) True G1552360
TU1776183 lncRNA downstream 49025 44427958 ~ 44428171 (-) True G1552358
TU1776178 lncRNA downstream 56245 44420683 ~ 44420951 (-) True G1552353
TU1776173 lncRNA downstream 66134 44410688 ~ 44411062 (-) True G1552348
TU1776212 lncRNA upstream 8826 44495553 ~ 44495793 (-) True G1552387
TU1776214 lncRNA upstream 9593 44496320 ~ 44496547 (-) True G1552389
TU1776221 lncRNA upstream 23041 44509768 ~ 44509976 (-) True G1552396
TU1776228 lncRNA upstream 31668 44518395 ~ 44518607 (-) True G1552403
TU1776230 lncRNA upstream 33842 44520569 ~ 44520791 (-) True G1552405
XR_005037493.1 mRNA downstream 113248 44353210 ~ 44363948 (-) False LOC118936320
XR_005037492.1 mRNA downstream 113253 44353212 ~ 44363943 (-) True LOC118936320
XM_036952913.1 mRNA downstream 172720 44298329 ~ 44304476 (-) False LOC110496346
XM_036952914.1 mRNA downstream 172720 44298329 ~ 44304476 (-) True LOC110496346
trnal-uaa-58 mRNA downstream 192853 44284261 ~ 44284343 (-) True trnal-uaa-58
XM_021572193.2 mRNA upstream 542 44487269 ~ 44508909 (-) False LOC110496351
XM_021572192.2 mRNA upstream 542 44487269 ~ 44537143 (-) True LOC110496351
XM_021572852.2 mRNA upstream 144039 44630766 ~ 44654925 (-) True LOC110496833
XM_021572196.2 mRNA upstream 207604 44694331 ~ 44703092 (-) False si:ch73-109i22.2
XR_002469547.2 mRNA upstream 331817 44818544 ~ 44856734 (-) False LOC110496357
TU1775356 other downstream 844319 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1462077 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 334036 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 560953 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 578407 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 1180634 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1301372 45788099 ~ 45792133 (-) False G1553693

Expression Profile