RNA id: XM_021572196.2


Basic Information

Item Value
RNA id XM_021572196.2
length 2112
RNA type mRNA
GC content 0.52
exon number 9
gene id si:ch73-109i22.2
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44684653 ~ 44703092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacagcagttgATGTAGAGGAGGAAAGAGATGTTCAGACATCCGTTGATACAGCCGTCTTGTGACGACCTATTTTAAATGTCATCATGGACTTTGACTACCAGCGCTTAAAAGATGTTGAAATCCTCAGGCGAGAAGAGCGAATCAGCTGCCTGCCAATCCAACCCCAAAAGCCTGTACCACACCAGCATTCTGCTCAAGACCCACCCACCCGCCAGACTCCTCCAATCAAACCCAGGCGGAGCTTAAAGGTCCCCAAAACCCTTCGTGAGGAGGTGGTGCTACCAGCCAAACAAACCAATGGCCAGGAGAATGAGacagtagtgaagagggtGTCTCCTGCTCTGACTCTGGGTGGCCCCGGGCCCCTGGAGCCCTTGTCCCCGTCCCTTCGGGCACACACCCTGCTGTGGTTTGAGAGGACACAGCTTCCCCGCCTGTGTCGGCCTGGTCGCCCAATGCCCCGCTGGCTACACGGCTTCGCCACACGCAGGGAGGCAGAGGAGCTTCTAAAGGACAAGCAGCAGGGCTGTTTTCTGCTCAGGCTCAGCGAGTCAAAGATTGGTTTTGTACTCTCATACAGAGGAATGGATAGGTGCCGCCATTTCATCatagaggaagaagagggtgGTAGAGGGGCGTGTTACCTCATCGCTGGGGAGGAGAGTCGCCATAGCAGCCTGCAGGAGCTGGTCAGCTATTACACCCAGTATCCCGTGGGGCCCTTCAACGAGATTCTCACCACGCCCTGTGACGAGTCCAGTGAAGCTTGTGAGGGTACAGTTAAACTGGGGTTGCAGGATGAAGGTGGAGAGACAACGAAAGTGACCGAAAAGGAAGCCTCATCATATGCACCCTCGGCTCCTGCCACTGTCCATGTCCAAGAGATATTGGCCAGCTCAGCCCCTACAAACGACGGGACGCCAGAGTAtgctgtggtgaagaaggtgctaAAAAAGTCCCTTTCTCAACCAGAAAACCAGCTTGGGGAACTGTTGGTGGTGACAAACCTGATCCTCCCCGAAGATGTGACAGAACCTGACGTTAGCTGTGCAGGAGCATTTGGCGGGGGAGAGAACGCCTTCGACGCACTGTACGCCCGGGTCAACAAGCCACCAAGCATGCTTTCCCATACATCTCCCTACGTCAATGTGGGCAATCCTCCAGGCCAGGAGGCGACAGCGTCCTCCGTCCCTCTCATGCACCGCGGGTCCACGGGGGACCCAAGCTACTGGAAGTTGGAGCCCCTGCACACCTATGAGGAAACCCCTCATCTGGTTCAACGTGAAGAAGAGACAAAGGAACACATCGACTTCTACGCCATGGGGCGCTGGCGGGATGCCGAGAGGAGTACAAGTGGGCGAGACCCCCAGCATCACCTCTACTCAGAGGTGAACCTAAGAACAAGAGAGGCCCCCAGTCACATcccccttccagccaggacagcCCCCAACCGGCCTTTACGACTGCCTCCCAGGCCTGTTAACTGCCCCCCTCAACAGGACGGAAGTGTGCAGCGATGTGGAGATCCCATCTTGTCCTCTTCCCCATCCCGATCTGGAGTCTTTCTGACACCTTGTTCAGAACGAACTTTGACCCAAGACCCGAGCACCAGCATCTATGAACAGATCCCAGAGAGGCCAACCAGCTCAAGGCCTCTGCTGCCTCCACCCAATCCGACCACCCCTTACTAAGACCCTATCATACAACTCCCCTTGTAAACAAAATAAACTATAAACACCAAAGACCCTCTTTGCAAATATCCAGAATTAAGCCTTACTTACTGTACACTTAAATCAACTGATCAAGTTATCTTTTCTATTTAACACAAGAGGCTAGAGACAGTCCTGAATGTCAATCTGTGTGCCAAAAATGCATCTACAGAAGTTGTGCTCCATTTTGTGTTCCGATTTTGTGCGCACTACCCCACAAAGATTGAGAAATGTGTAAAAATACAAGAATCTCACTTGATAAAACTCAGCTTGTTTATTTCCCAAACAAGACAAAGTCCCACCCAGAACTACCTGGGAAACTATTCACTTTTTTTCTGTAGAAATTACTTTAAGGGTTTCAAAACAAATTAATTACAAAATAAAACGTAAGGCAAAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1776538 lncRNA downstream 18221 44675802 ~ 44676110 (-) True G1552696
TU1776524 lncRNA downstream 34119 44659947 ~ 44660212 (-) True G1552682
TU1776334 lncRNA downstream 73037 44621059 ~ 44621294 (-) True G1552506
TU1776329 lncRNA downstream 75841 44618290 ~ 44618490 (-) True G1552501
TU1776322 lncRNA downstream 79098 44614943 ~ 44615233 (-) True G1552494
TU1776545 lncRNA upstream 4074 44707166 ~ 44707930 (-) True G1552702
TU1776548 lncRNA upstream 4950 44708042 ~ 44716604 (-) True G1552703
TU1776624 lncRNA upstream 142191 44845283 ~ 44856861 (-) True LOC110496357
TU1776608 lncRNA upstream 164357 44867449 ~ 44868046 (-) True G1552760
TU1776605 lncRNA upstream 187578 44890670 ~ 44892103 (-) True G1552759
XM_021572852.2 mRNA downstream 39406 44630766 ~ 44654925 (-) True LOC110496833
XM_021572192.2 mRNA downstream 157188 44487269 ~ 44537143 (-) True LOC110496351
XM_021572193.2 mRNA downstream 185422 44487269 ~ 44508909 (-) False LOC110496351
XM_036952922.1 mRNA downstream 207604 44477196 ~ 44486727 (-) True LOC110496350
XM_021572191.2 mRNA downstream 207606 44477196 ~ 44486725 (-) False LOC110496350
XR_002469547.2 mRNA upstream 115452 44818544 ~ 44856734 (-) False LOC110496357
XM_036951390.1 mRNA upstream 235038 44938130 ~ 44943098 (-) True LOC110496937
XM_021572215.2 mRNA upstream 638911 45342003 ~ 45347556 (-) True LOC110496360
XM_021572216.2 mRNA upstream 666477 45369569 ~ 45372973 (-) True LOC100499581
XM_021572227.2 mRNA upstream 772843 45475935 ~ 45562167 (-) False LOC110496365
TU1775356 other downstream 1061454 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1679212 42961990 ~ 43015119 (-) False LOC118936491
TU1776616 other upstream 117671 44820763 ~ 44828808 (-) True G1552768
TU1776725 other upstream 344588 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 362042 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 964269 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 1085007 45788099 ~ 45792133 (-) False G1553693

Expression Profile