RNA id: XM_036951390.1


Basic Information

Item Value
RNA id XM_036951390.1
length 1386
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110496937
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44938130 ~ 44943098 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGCACAGCCACAGATGTCTCGACAAATACAACAGCTACACCTGTtgcaacatcaacaacaaaagGAATCACAACCACTACATTCATCTCAGTCGCTGTTCCTGTTGCCACAGTACCTGGTTCTGCCATCACAATACCAACTGGAGAACCCGTCACTGTTCCTGTTACTGGTTCTACAACTACAACCACATCTGTGGCCCCCTCAACTACTGTTTCAAGCACAGCACCAACATTGGCTATGACAACTACCAGCACAACTCCAacaactacttctactactacgaCAACAACTACCACAACGACTGCACATCTTGCAGTGGTTACATTACAACTCACCATACAAGAGGTTTTTGTACCAGCTTTGAGTAatcctcaaagcacagaatttcAAACACTTGCGGTAACCATTACTTCAGTGTGTGACGTGATCTATCGAGCAAAATATGGGATTTTTTTCATCCGGACGATTGTCATTTCATTCATACCAGTGTTCCGTTCTCGTATGGCAGCAGACACACAGGTGGAGCTGGAAGTGGTGTTCAATGAGACCGCCATTGCAACTATCGCTAATGCAACTATGCCCAAGGACATTGACATTAAAGATACactgaaagaggctgtgaccaatccaaactctaccTTCAACCTCTCTGTGGTTCCAAACTCCATCACTATTATCAGGGTcccaaatacatccacaggtgccaCCACAATTACAACGGCTACTCCTGTCATCACAACCGTTGTCCCAGCTGCTCCAACCACTACAACTGCTGCTGCCACCACTACCTCTGTGGCCACAAATACACTCACTACAGTGTCTGTGGAGTTCACGTCCAAAGGAGAAACATTTATCTCCGACCTATCAACCTCATCCTCTCAGGCCTTTCAAACTCGAGCATCACTGATTAAAACACAGCTTGAACCTTTCTATCGATCAGCTTTCGCCTCTTTCAACAGTTTGACAGTAATAAAATTCAGAAATGGATCAATCATTAACACCATGAAGTTAGCATTTAGCTCCTCCGCTGTGCCAAATTCCAAGGAAATTGGCACCGTTTTGATAAAGGCTGCACAAAACATCACAGCTTTCAACATCAACCCCACGTCAGTTACTGTCAGCGGTGAAGTTGTGACCTCAAGTGGAATAAGCAGCAAGACCAGTCTCTTCACTGCTTCCTGTCTGGTGGTGTTGTCGCTGCTGCTGTCAAGCTAGTCTCAGCAGCAAGCAGCAGTATGAAATATCTTAACTTTGAAAATGTCATGTCCCCCACTCCCATCATATGTAATGGCAACCTATTTAATCAGTATTTGTTAACTTAAGTTGATTCtcattatagttatagttattATACTCATTATTCAAATTGAAATAAACCTATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1776658 lncRNA downstream 25317 44912557 ~ 44912813 (-) True G1552810
TU1776649 lncRNA downstream 32080 44905738 ~ 44906050 (-) True G1552801
TU1776642 lncRNA downstream 43122 44894338 ~ 44895008 (-) True G1552794
TU1776605 lncRNA downstream 46027 44890670 ~ 44892103 (-) True G1552759
TU1776608 lncRNA downstream 70084 44867449 ~ 44868046 (-) True G1552760
TU1776754 lncRNA upstream 17861 44960959 ~ 44999030 (-) True G1552868
TU1776727 lncRNA upstream 104582 45047680 ~ 45061097 (-) False G1552866
TU1776734 lncRNA upstream 104582 45047680 ~ 45061097 (-) True G1552866
TU1776763 lncRNA upstream 132746 45075844 ~ 45082410 (-) True G1552876
TU1776780 lncRNA upstream 167895 45110993 ~ 45111199 (-) True G1552891
XR_002469547.2 mRNA downstream 81396 44818544 ~ 44856734 (-) False LOC110496357
XM_021572196.2 mRNA downstream 235038 44694331 ~ 44703092 (-) False si:ch73-109i22.2
XM_021572852.2 mRNA downstream 283205 44630766 ~ 44654925 (-) True LOC110496833
XM_021572192.2 mRNA downstream 400987 44487269 ~ 44537143 (-) True LOC110496351
XM_021572193.2 mRNA downstream 429221 44487269 ~ 44508909 (-) False LOC110496351
XM_021572215.2 mRNA upstream 398905 45342003 ~ 45347556 (-) True LOC110496360
XM_021572216.2 mRNA upstream 426471 45369569 ~ 45372973 (-) True LOC100499581
XM_021572227.2 mRNA upstream 532837 45475935 ~ 45562167 (-) False LOC110496365
XM_036952932.1 mRNA upstream 532837 45475935 ~ 45562167 (-) False LOC110496365
XM_036952935.1 mRNA upstream 913635 45856733 ~ 45876685 (-) False LOC110496374
TU1776616 other downstream 109322 44820763 ~ 44828808 (-) True G1552768
TU1775356 other downstream 1305253 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1923011 42961990 ~ 43015119 (-) False LOC118936491
TU1776725 other upstream 104582 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 122036 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 724263 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 845001 45788099 ~ 45792133 (-) False G1553693
TU1777652 other upstream 845001 45788099 ~ 45803048 (-) True G1553693

Expression Profile