RNA id: TU1777285


Basic Information

Item Value
RNA id TU1777285
length 1880
lncRNA type read_through
GC content 0.39
exon number 2
gene id LOC110496365
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 45475935 ~ 45562167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaatatcaaccatgtgtagttaactagtaattaggattgttttttataagtttaatgctagctagcaacttaccttggcttactgtatttgcgtaacaggcagacttgccaagttaaataaaggtgtaattttttttggggggggggggggggggGTGTTAGCATTAATTGAAATGTTCACAGGTAAATGTTGTGCCCctgtcactgccccccccccccctccccaatgtGTTGCAGTCAGACCCATCGCCATCTGTCACTCAACTGTGAACAAAGGGATGAGTGGAGAAGGTGCTCCTTTTTTCATTTTATTGAAATGACACAAGTAGAACCCAAAGTTCTCTCATCTTTAGTTTTTGAAGATGAGTTCTTTTTATTCTCCTCTGCCTGCAGAAGCTCCTGTTGTTCAGGGCCTGTTGCTCCCTAACCCACGCCAGGTAGAACTTGAAAGGCAGATGTGTTTTGGCTGGCTTGTTTTATTTGGGATTTTAGCTTTGATTTTTAGATTTTGAGGAAGTCTTCTGTGTTTATTTTGTCATCGTTGTTTCCTTTTTCTTTGTTACTTGTGGAACTAGTGGTGCCATGGCTGTATGTCAGAAACACAGCCTGGGGTGCTGTGGCTGTATGTCAAATGGACCAAGGTGCCATGGCTGTATGTCAGAAATACAGACCTCGGtgccgctggtctctgtctctgtagtagGAGGGAGGCCTCCTACTACCACTTCGCAAGTGAAAACTGTGCCTGATACTCAACAAAGAGATCCATTGTTTTTGGTGCTGTTGGTTATTATTACTGTATAACAATACAAAAGAAAGGTGGGGTGCtggctaactgctagccccttcTCCCACAGGGCGTTAGGGTTCTAGGCTCTCCTCTcccatagggttagggttctcggctctcctcttctcGATGTGCAATCATGTTAACATTCCATTCTTCCAGTCCTACTGTTTCATCTGTATCAGTTAACATTAAtaattttattattttctattttGATTGTGTTTTTGTTCTAATGTGCGAGTAGAGTCACTAGTCAAAGGGTGTGAAATGTGAAATATGGAAATccaagttttttttgttttggggTGTGTATTTTAGGTTTTTCCCTTTTTTTTCAGATGTATTATGAATTATTTTAGCAGAAGGTCCAACacaacatacatttttgtacatAATCCTGTAAATGTCTTTAAATACTCAAGCCTTTTCTGGGGTGAAGGAAGGAAAATGATACCATTTTTAAAGGTATTAGAGGAAGCAAGGGAGGAAGTGCTTGATGAAGAAAAGCCTTACGTTTCAGTTTCTTCATCTGTGTGAGTTTGATGCTTACAGGGTTGCTCTGGTTACGTGTATACATTTTAAGTGCTGCTTACATCACTAAGACAAAGATATGGAGTAGCTATGGCCCCctagttttttttaaaggtttttttttttttccttttagctttactttttttaaagaaaagggAACATATGTTCACAAAAATGTACTGAAAATTCAACAATGTAGTAGCTCCTCATGTTGCACTGAGCTTGCCAGTGGTGGCTGACAAGGTGATCCTATTATCCAGTTTGTTGGTTGTTGTCCTTTACAGAAGACTGAACTGTTTTAGGAATATTTAAAGAAAACCAAGTCGGTCGTTTTCAACAAAAGTGGTTAAGTTTTTATGGCCTTACAATGTATTTTATTCAGATTTCTTTGCAATTTTCtttttctacagtataaactattGCTCACGGTCTGGCAAGTTAATTTATTAGCACTGCGTCTCCATCTTTCCTTCCACTTGGAAAGAGTTCATGTTGGTTATATTGCCAGTTTTTTTACTTTTGCAGTTTGTACTAAAGGTTTAATAAAAACGT

Function

GO:

id name namespace
GO:0031061 negative regulation of histone methylation biological_process
GO:0048863 stem cell differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0051574 positive regulation of histone H3-K9 methylation biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0003682 chromatin binding molecular_function
GO:0032452 histone demethylase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1777320 lncRNA downstream 15601 45460058 ~ 45460346 (-) True G1553380
TU1777318 lncRNA downstream 17522 45458055 ~ 45458425 (-) True G1553378
TU1777257 lncRNA downstream 72283 45399694 ~ 45403664 (-) True G1553326
TU1776999 lncRNA downstream 211028 45187074 ~ 45264919 (-) True G1553097
TU1776995 lncRNA downstream 284406 45182883 ~ 45191541 (-) True G1553094
TU1777417 lncRNA upstream 74470 45593786 ~ 45594054 (-) True G1553473
TU1777448 lncRNA upstream 110450 45629766 ~ 45630007 (-) True G1553503
TU1777468 lncRNA upstream 131924 45651240 ~ 45651482 (-) True G1553523
TU1777477 lncRNA upstream 140346 45659662 ~ 45659974 (-) True G1553532
TU1777664 lncRNA upstream 281635 45800951 ~ 45802614 (-) True G1553701
XM_021572216.2 mRNA downstream 102974 45369569 ~ 45372973 (-) True LOC100499581
XM_021572215.2 mRNA downstream 128391 45342003 ~ 45347556 (-) True LOC110496360
XM_036951390.1 mRNA downstream 532849 44938130 ~ 44943098 (-) True LOC110496937
XR_002469547.2 mRNA downstream 619213 44818544 ~ 44856734 (-) False LOC110496357
XM_021572196.2 mRNA downstream 772855 44694331 ~ 44703092 (-) False si:ch73-109i22.2
XM_036952935.1 mRNA upstream 337417 45856733 ~ 45876685 (-) False LOC110496374
XM_021572235.2 mRNA upstream 337418 45856734 ~ 45890268 (-) True LOC110496374
XM_036952937.1 mRNA upstream 392540 45911856 ~ 46028766 (-) False LOC110496375
XM_036952936.1 mRNA upstream 392540 45911856 ~ 46028798 (-) False LOC110496375
XM_036952938.1 mRNA upstream 392540 45911856 ~ 46028798 (-) False LOC110496375
TU1776725 other downstream 388161 45047680 ~ 45087786 (-) False G1552866
TU1776762 other downstream 402607 45065134 ~ 45073340 (-) True G1552875
TU1776616 other downstream 647139 44820763 ~ 44828808 (-) True G1552768
TU1775356 other downstream 1843070 43631006 ~ 43632877 (-) True LOC118940987
TU1774442 other downstream 2460828 42975998 ~ 43015119 (-) False LOC118936491
TU1777490 other upstream 148045 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 268783 45788099 ~ 45792133 (-) False G1553693
TU1777652 other upstream 268783 45788099 ~ 45803048 (-) True G1553693
TU1778112 other upstream 581932 46101248 ~ 46108102 (-) True G1554091
TU1779304 other upstream 1392661 46911977 ~ 46912915 (-) True G1555168

Expression Profile