RNA id: XM_036952935.1


Basic Information

Item Value
RNA id XM_036952935.1
length 2461
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC110496374
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 45856733 ~ 45890268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCATAGAGCCCAACCCTGCTCCTGGATGGGTGAGGTCCCTGCCAACCCAGTCGGTCAGTGAACCCCCCCACTCCCCACCCATCGCCTCCCGACCAGGACCCCCTGGGTCACCCAGAGGAGCAGCAGGGATGTACCAGGAGGTGGCCTTCCTAGCGGGCAGCACGGAGAAAGAGTTCACTCCCTTCCACTTCCCCATTGAGAACCAGCAGGAGGTGGTAACTAAGAAGGGTGTGTTCTTCAAGCGGCAACGGCTGCTGCGGAGGCCCAATGAGGGGCAGGAGGAAAATGACCTATCAGCCGTCATTAACGTGGGCGGTATCAGGTACCGTATCCCCTGGTCCGTTCTGGAGGAGTTCCCTCTGACGCGGCTGGGCCGGCTGAGGGGCTGTAGCTCATTGGACGAGATCATGGAGGTGTGTGATGACTACGATGACGGGTGCCAGGAGTACTTCTTTGACCGCAGCCCATCTGCGTTCCGCACTATCGTGACGTTCCTAGCGGCAGGGCGGCTGCGGCTGCTGAGGGAGATGTGTGCCCTGTCCTTCCAGGAGGAGCTGGTCTACTGGGGCGTGGAGGACACCAGGCTGGAGTGGTGCTGCCTCCGAAAGCTACGCATCAGGCAGGAGGAGCTCAAGGAGCAGCTGAGGATGGAGGAGGCAGAGCTCACCTCAACCCTGACCCCCCAGAGCTGTGAGGATGGGCAGGGGCACgccggggagggagggggggaggaggagagccgCATGGCGGGGTGTATGCGCAGGCTGCACGACATGGTGGAGAACCCTCAATCTGGACTACCTGGAAAGATCTTTGCCTTCTTGTCGGTGGTGTTTGTGGCCATCACCGCAGTAACGCTCTGCATCAGTACCATGCCCGACCtccgggaggaggaggagaggGGTGAGTGTTCTCAGAGGTGCTACAATATCTTTGTCctggagactgtgtgtgtggccTGGTTCTCTCTGGAGTTCCTGCTGCGCTTCATCCAGACGCCGAGTAAGTGTGTGTTCCTGAAGACGCCCCTCAACATCATCGACGTGGTGGCCATCCTGCCCTATTACATCACTGTGATCGTAGACTCTCTGTCTGAGGGAGGGGAGAAGCCCAGCGGCGGGAACAACTACCTGGAGAAGGTGGGCCTGGTGTTGCGGGTACTCCGGGCCTTGAGGATCTTCTACGTGATGCGTCTGGCGCGCCACTCCCTGGGGCTGCAGACCTTAGGCCTGACGGTCCGACGCTGCACCCGCGAGTTCGGCCTGCTCCTCCTGTTCCTGTGTGTTGCCATGGCACTGTTCTCCCCGCTGGTGTTCCTGGCGGAGAGCGAGATGGGCGCCAAGTACGACTTCACCAGCATCCCCGGCACCTACTGGTGGGCGGTGATCTCCATGACAACGGTGGGGTACGGGGACATGGTGCCGCGTAGCATCCCGGGTCAGGTGGTGGCGCTCAGCAGCATCCTCAGTGGGATCCTCCTCATGGCGTTCCCCGTCACCTCCATCTTCCACACGTTCTCTCGGTCCTACCTGGAGCTGAAGgaggagcagaacagaacacTGAGACAGAAACCAGACTTCCAGGACTCCAGCAAGTCTCAGAACAGCGAGGACTCGGCCGAAACGGACAGTTAACATGGCATCACTGAAGTCGCCTCCTCTGCTTTACGCAGGAAGTCCATCGCCCTTGCGTCACAGAGGAGGGCCATGCAGACTCAAGACTGAGTGTGTGTGCAACGTGAAAGCCTGTGGGTGTGCAGTGCACTGTGGGAAACTCGTACTAAAGCTGGAGGATCTAAACAGGGATTTCAAGCTTAAAAAGAAAAGGAGCTCCAACATTTTGTGACCCTCCATAGCTCTGTCCATCAGAGTGTGTTCAAGAGTTTCTAAGATTTTATAAGACAGCTGCATAAGTCTTTTTGCTGACATTACTGGTGTATAGCTGATCACATTATAAAATCACAAGTTCTCTGTGGTCAAAGGACATTTCACCCAGGAGTATAGAAGCCCTACAACACAGGAGTATAGCCCTACAGCACAGCATGGGGAGAAACCTTCTCTCTCACAAATATTCAGTATGATTAAAGCTATTATTTTAAGGGAAAAAACACTACAAATATTATAATTTTGGTATATATTTAGGATAAGAAATATTGCAACAAGATATAAGTGCAATAAGAAAGATTATTTAACTATAAACAACACATTTACATATTTCAGAATGCTTAGTTTGCGTCTATATAGACTCAGGATCTGCATATTTTAATAAATGTAAGAAAACCATGACCTCGGCTGATGCAATGTATGATTCTACACTTTATTAAATTAATTTGATCCCATGATTCTGTCTGGGGGTTTTCCTCCAATTTCCTCTGAATAATAATGGCCTTGGCTCCAGACATGTTATGTTCAATCTaatcaggggcgcaactttggttttagaagtgggggggacataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1777993 lncRNA downstream 4993 45851427 ~ 45851740 (-) True G1553990
TU1777991 lncRNA downstream 6403 45849984 ~ 45850330 (-) True G1553988
TU1777684 lncRNA downstream 22782 45833711 ~ 45833951 (-) True G1553721
TU1777664 lncRNA downstream 54119 45800951 ~ 45802614 (-) True G1553701
TU1777477 lncRNA downstream 196759 45659662 ~ 45659974 (-) True G1553532
TU1778029 lncRNA upstream 26648 45903333 ~ 45903538 (-) True G1554026
TU1778045 lncRNA upstream 44758 45921443 ~ 45921754 (-) True G1554041
TU1778196 lncRNA upstream 341335 46218020 ~ 46218324 (-) True G1554172
TU1778245 lncRNA upstream 347247 46223932 ~ 46286906 (-) False G1554213
TU1778244 lncRNA upstream 399420 46276105 ~ 46286906 (-) True G1554213
XM_021572227.2 mRNA downstream 294566 45475935 ~ 45562167 (-) False LOC110496365
XM_036952932.1 mRNA downstream 294566 45475935 ~ 45562167 (-) False LOC110496365
XM_021572216.2 mRNA downstream 483760 45369569 ~ 45372973 (-) True LOC100499581
XM_021572215.2 mRNA downstream 509177 45342003 ~ 45347556 (-) True LOC110496360
XM_036951390.1 mRNA downstream 913635 44938130 ~ 44943098 (-) True LOC110496937
XM_036952937.1 mRNA upstream 35171 45911856 ~ 46028766 (-) False LOC110496375
XM_036952936.1 mRNA upstream 35171 45911856 ~ 46028798 (-) False LOC110496375
XM_036952938.1 mRNA upstream 35171 45911856 ~ 46028798 (-) False LOC110496375
XM_036952939.1 mRNA upstream 88896 45965581 ~ 46028798 (-) True LOC110496375
XM_021572243.2 mRNA upstream 162966 46039651 ~ 46056951 (-) False LOC110496377
TU1777652 other downstream 53685 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 64600 45788099 ~ 45792133 (-) False G1553693
TU1777490 other downstream 188993 45667361 ~ 45667740 (-) True G1553544
TU1776725 other downstream 768947 45047680 ~ 45087786 (-) False G1552866
TU1776762 other downstream 783393 45065134 ~ 45073340 (-) True G1552875
TU1778112 other upstream 224563 46101248 ~ 46108102 (-) True G1554091
TU1779304 other upstream 1035292 46911977 ~ 46912915 (-) True G1555168
TU1779770 other upstream 1666875 47543560 ~ 47546571 (-) False G1555543
TU1780537 other upstream 2028154 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 2106198 47982883 ~ 47983609 (-) True LOC110496401

Expression Profile