RNA id: XM_021572243.2


Basic Information

Item Value
RNA id XM_021572243.2
length 4933
RNA type mRNA
GC content 0.52
exon number 35
gene id LOC110496377
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 46039651 ~ 46056951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTAGTTCTTACCGAATTCAGTTTAGCTGCTCACGTTGGTGGAATGGATGTCTGGGAAATGACTGAATGAAAAATAACTAAAGCCAGTTATTATTTTTAGCAATTGGAGCGTATGAATTATGCTGTAATAAAAGTGAAAGGCAAGACTAACTGGAAACTATCGTAGCTTATTCATGATCGGTAGGTTTATGTGATAAAATACTGGAACACCTTGAAGCTAAGGTAGCTAGCAGACGCGAGTGGAGCATTAATTAGCAAGTGCTGAGGGGCTTGCAGGATGTATGCCGTATACCGCCAAGCCCACTCCCCCACCGCCATCGAGTTCTCTGTCTACTGTAACTTCATCTCCAACGTGGAGAGAAACCTGGTCGTCGCTGGAACGTCTCAGCTTTACGTCTACAGGATCATCCACGATGTGGAGAATGCCTCAAAGACAGACAAATCACCAGATGTCAAGAGTCGTAAGGAGAAGTTGGAGCAGGTGGCTTGTTTCTCCTTGTTCGGTAACGTCATGTCCATGGCCTCTGTTCAGCTGGTAGGAGCCAACAGAGACGCTCTCCTGCTTAGCTTCAAAGATGCTAAGCTGTCAGTGGTGGAGTATGATCCAGGAACACATGATCTGAAGACTCTCTCGCTTCACTTCTTTGAGGAGCCAGAGCTGAGGGATGGGTTTGTCCAGAACCTGCACATCCCCATGGTTCGTGTGGACCCAGAGAACCGCTGTGCTGTGATGCTGGTGTATGGAACTCAGCTGGTGGTGCTGCCATTCAGAAAGGACACACTTACTGACGAACAGGAGGGAGTAGTGGAAGGGCCCAAGTCGAGCTTTCTTCCCAGCTACATCATAGATGTCCGTGAGTTGGATGAGAAGCTTCTGAACATCGTAGATATGAAGTTTCTCCACGGTTATTATGAGCCCACATTGCTCatcctgtatgagcccaaccagACGTGGCCTGGGCGTGTAGCAGTGAGACAGGACACCTGCAGTATCGTAGCCATCTCTCTCAACATCATGCAGAAGGTTCACCCTGTCATCTGGTCCCTCAGCAACCTGCCCTTTGACTGCACACAGGTCATGGCTGTGCCCAAGCCCATTGgtggtgtggtggtgtttgcTGTCAACTCCCTGTTATACCTCAACCAGAGTGTTCCTCCATATGGCGTGTCACTCAACACACAGACCACAGGGACCACCGCCTTCCCCCTGCGTATACAGGAGGAGGTGAAGATAACTCTAGATTGTTCCCAGTCCTCCTTCATCGGCTCTGACAAGATGGTCATCTCTCTGAAAGGAGGAGAGATcTATGTGTTGACCCTGATCACTGATGGCATGAGGAGTGTCCGGGCCTTCCACTTAGACAAGGCTGCTGCCAGCGTTCTCACCACCTGTATGATGACCATGGAGCCTGGGTATCTGTTCCTGGGCTCCCGGCTGGGAAACAGCCTCTTGCTGAAATACACAGAGAAGTACCAGGAGAATCCAGAGAAACCACCTGTGGAGGAGGacaaagagaaggaagaggagaccGATGAGGAGAAGCAGGAGGAACCTCCTAGTAAAAAGAAGAGGGGTGAATCCTCTACCAAGTTGACAGCTGGTAAGAACCAACTGCCTGATGAGGTGGATGAAATTGAGGTGTACGGGAGCGAGGCGGCATCTGGCACACAGTTGGCCACCTACTCCTTTGAGGTGTGTGACAGCATACTGAACATCGGACCTTGTGCTGGTGCGTCCATGGGGGAGCCAGCCTTCCTCTCTGAAGAGTTCCAGACCAACCCAGAACCTGACCTGGAGATAGTGGTGTGTTCTGGCTTTGGGAAGAACGGAGGTCTATCTGTGCTTCAGAGAAGCATCCGACCCCAGGTGGTCACTACATTTGAGCTGCCAGGTTGCCATGACATGTGGACTGTCATCTCCAATGAGGTCAAGGAGAAAGTCAAAGAGAAAGACAAGCCCCCTGCAGCTGAGGGAGAAGGTGAGACCcctgaggaggaagaagaggagaagacggTACCTGCGCCAGTGGAGGACGATAAGAAAAAACATGGCTTTCTGATTCTCAGCAGAGAGGACTCCACCATGATCCTGCAGACGGGCCAGGAGATCATGGAGCTGGACACCAGTGGTTTCGCCACCCAGGGGCCCACTGTGTTCGCTGGGAACATCGGAGACAACAAATACATCATCCAGGTCTCCCCCATGGGTATACGGCTACTGGAAGGAGTGACCCAGCTGCACTTCATCCCGGTGGACCTGGGTTCTCCCATAGTGCAGTGCTCCGTAGCGGACCCCTATGTGGTCATCATGACGGCAGACGGAGTGGTCACCATGTTTGTCCTGAAGACCGACTCCTACATGGGCAAGACCCACCGCCTGGCCCTGCAGAAACCACAGATAGCTGCTcaACCCCGTGTGATCACCCTGTGTGCGTTTCGTGACGTCAGCGGGATGTTCACCACCGAGAACAAGCAGACCTGTCACACTGAGGATCAAGACAGCATGTTCAAGAGCCAATCGGAGACCGAGACCATTCTACAGGACCTCAGTAACACAgtggatgatgaggaggagatgttgtatGGAGACTGTAACCCAGCAGGCATCACCCCCACCAAAGACGAGTCCCACCCCGGCTACCGCCTCTCCTCTGGGGCCCTGGGTGGGGGCTCCGAGGGGAGGTCAGGACGAGCTGAACCTACACACTGGTGCATGATGGTCCGCGAGAACGGCGTCATGGAGATCTACCAGCTACCTGACTGGAGACTGGTGTTCCTGGTCAAGAACTTCCCTGTTGGCCAGAGAGTGTTGGTTGACAGCTCCGCCGGCCAATCAGCAGCCCAGGGGGAGGGGAAAAAGGAGGAAGTGACACGACAGGGAGAGATCCCATTGGTCAAAGAGGTGGCCCTGGTGTCGCTCGGCAACAACCACTGCAGACCCTACCTGCTGGTCCATGTTGAACAGGAGCTTCTGATCTATGAAGCATTCCCATATGACCAGCAGCAGGCTCAGAGCAACCTGAAGGTCCGCTTCAAGAAGATGCCCCACAACATCAACTTCCGGGAGAAGAAGTCGAAGGTGAAGAAAGATAAGAAGGCGGAGGGTCAGGCTGGTCTCAGCGAGGAGGGGCCAACGGTGGTCAAAGGTCGCGTGGCCAGGTTCAGATACTTTGAGGATATCTCAGGCTACTCTGGGGTGTTCATCTGTGGCCCCTCCCCTCACTGGATGCTGGTGACATCACGGGGGGCGATGAGGCTCCACCCCATGACGATTGACGGACCAATCGAGTCCTTCTCCCCCTTCCACAACATCAACTGCCCTAAAGGTTTCCTCTACTTCAACAAGCAGGGCGAGCTGAGGATCAGTGTTCTACCCACGTACCTGTCGTATGACGCCCCCTGGCCTGTCAGGAAGATTCCTCTGAGGTGCACGGTTCACTATGTGTCCTACCATGTAGAGTCCAAGGTGTATGCAGTGTGCACCAGCGTGAAGGACCCCTGCACTCGCATCCCCAGAATGACCGGAGAGGAGAAGGAGTTTGAGACCATAGACAGAGACGAACGCTACATTCCTCCTCAGCAGGAGAATTTCTCCATTCAGCTCATATCTCCTGTCAGCTGGGAGGCCATCCCTAACACACGGATTGACCTGGAGGAGTGGGAACATGTGACTTGTATGAAGACTGTGGCGTTGAGGAGTCAGGAGACCGTGTCTGGGCTGAAGGGATACGTAGCTGCCGGGACTTGTCTCATGCAGGGGGAGGAGGTCACCTGTAGGGGCCGGATCCTGATCCTGGATGTGATTGAGGTGGTCCCGGAACCGGGTCAGCCCCTGACGAAGAACAAATTCAAggttctgtatgagaaggagcaGAAGGGACCGGTCACAGCTCTGTGTCACTGCAGCGGATACTTGGTCTCTGCCATCGGACAGAAGATCTTTCTGTGGAGTCTGAAGGACAATGACCTGACAGGCATGGCCTTCATCGACACCCAGCTCTACATCCACCAGATGTTTAGCATCAAGAACTTTATCCTGGCAGCTGACGTCATGAAGAGCATCTCTCTGCTCAGATACCAGCCTGAGAGTAAGACGTTGTCGCTAATTAGCAGGGACGCCAAGCCTCTGGAGGTCTACAGCGTAGAGTTTATGGTGGATAACAACCAGCTGGGATTCCTGGTGTCGGACCGAGACCAGAATCTGTCGGTGTACATGTATCTGCCTGAAGCTAAGGAGAGTTTCGGAGGCATGCGTCTGCTGAGGAGGGCAGACTTTAACGTGGGAGCTCATGTCAACGCCTTCTGGAGGATGCCCTGTCGAGGGGCACAGGACACAGCCACCAAAAAGACCCTGGCCTGGGACAACAAGCACATCACATGGTTTGCAACTCTAGATGGAGGCCTCGGGCTGCTGCTGCCCATGCAGGAGAAGACCTACCGCAGATTGCTGATGTTGCAAAATGCTCTTACCACAATGCTGCCACACCACGCAGGATTAAACCCCAAGGCATTCAGGATGTTGCATGCTGACCGGCGGCAGCTCCAGAACGCGGTGCGGAACATTCTGGATGGAGAGCTACTCAACAAATACCTGTACCTCAGCACCATGGAGCGTAGTGAGTTGGCCAAGAAGATTGGCACCACCTCTGATATAGTCTTGGATGATCTTCTTGAAGTTGACAGGGTGACTGCTCATTTCTGAGTGCAGCATCCTTGATCACGCCCCCTCAGCATGTGAGACCCAGGGTCTTCCCCCATTTTTTTATATTAAAGGAGGCTTTTTGGTATCTATTTTCTCGATGGAAACGTAAGCTTGTGTTTAGTCAATTTTGTTCAGTCATAAAGGTGTTTAATCATGTTTCTTAGAATATTTTTTCAACAAAATATGATAAATTCTGAATTGTATGGGTCTTTATAAAATGTTATAACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1778045 lncRNA downstream 117897 45921443 ~ 45921754 (-) True G1554041
TU1778029 lncRNA downstream 136113 45903333 ~ 45903538 (-) True G1554026
TU1777993 lncRNA downstream 187911 45851427 ~ 45851740 (-) True G1553990
TU1777991 lncRNA downstream 189321 45849984 ~ 45850330 (-) True G1553988
TU1777684 lncRNA downstream 205700 45833711 ~ 45833951 (-) True G1553721
TU1778196 lncRNA upstream 161069 46218020 ~ 46218324 (-) True G1554172
TU1778245 lncRNA upstream 166981 46223932 ~ 46286906 (-) False G1554213
TU1778244 lncRNA upstream 219154 46276105 ~ 46286906 (-) True G1554213
TU1778285 lncRNA upstream 230016 46286967 ~ 46288146 (-) False G1554248
TU1778286 lncRNA upstream 230016 46286967 ~ 46288146 (-) True G1554248
XM_036952936.1 mRNA downstream 10853 45911856 ~ 46028798 (-) False LOC110496375
XM_036952938.1 mRNA downstream 10853 45911856 ~ 46028798 (-) False LOC110496375
XM_036952939.1 mRNA downstream 10853 45965581 ~ 46028798 (-) True LOC110496375
XM_036952937.1 mRNA downstream 10885 45911856 ~ 46028766 (-) False LOC110496375
XM_021572235.2 mRNA downstream 149383 45856734 ~ 45890268 (-) True LOC110496374
XM_036952941.1 mRNA upstream 4093 46061044 ~ 46071209 (-) False LOC110496378
XM_021572245.2 mRNA upstream 4093 46061044 ~ 46074477 (-) True LOC110496378
XM_021572246.2 mRNA upstream 23546 46080497 ~ 46142731 (-) False LOC110496379
XM_021572247.2 mRNA upstream 23546 46080497 ~ 46142731 (-) True LOC110496379
XM_036952943.1 mRNA upstream 520507 46577458 ~ 46640870 (-) False LOC110496382
TU1777652 other downstream 236603 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 247518 45788099 ~ 45792133 (-) False G1553693
TU1777490 other downstream 371911 45667361 ~ 45667740 (-) True G1553544
TU1776725 other downstream 951865 45047680 ~ 45087786 (-) False G1552866
TU1778112 other upstream 44297 46101248 ~ 46108102 (-) True G1554091
TU1779304 other upstream 855026 46911977 ~ 46912915 (-) True G1555168
TU1779770 other upstream 1486609 47543560 ~ 47546571 (-) False G1555543
TU1780537 other upstream 1847888 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 1925932 47982883 ~ 47983609 (-) True LOC110496401

Expression Profile