RNA id: XM_036952957.1


Basic Information

Item Value
RNA id XM_036952957.1
length 1873
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC118941174
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47248660 ~ 47250967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATGGCAGTAAGGCACTGAGCTACTAATTGCGGAGTTTTGCGTTGTCTGGGCTGTTGGTGGTTTAAGGCTTTGATATGGCTTTTGGAATTAATTTGGGAGCACTCCAGTTTTACATGGGCTCCACGTGATGCCCAGAGAGTAAGAGGCTATGGGTTTTCTGGCTCTTCCAGAATGGAAGTTGAGCAGAGGCAAACAGGTGGCAGCTATCCCCAGGATCAATTCAGACCAGCCTCTCACACTTCTGGTTCGGTCCAGAGAGAAGCTACTTACCGCGGGACTGGCTACAACACACTCGGAGGCTTTGCTTCAAGCTCCCTCCAGCCAGCCCCAAGGGGCTCTGGATCTATCCCCAGCAGCTTTACCTCCGCCCAGACAAAGGGTAAGAGGACCCGTGCCAAGAATACTGACATTAGCCTCTCTGGTTCTATAGCCAGTGGATCCTCTGTCACCCACAACAAGCATCAAACCAAGGCCAGCAGAACCTATGGTCAAAGTGTCACTGACCCCAGTGCATTAAGGCCAGTTTCAAGTTGGGAGGTAAAGCGAATCCAGGCCAACACTCTTCGTACTGTACAGCCTCACTCCGGCAGCTCTGGACTAGTCCAGAATCCTGATGTTGTGTTTAATGTCCAGAGTAGAACTGCCTCTAACCTGAAACCATCTACTCCTAACTATGGCTCTACCCAGAGCGAATTTGTCCAGACTCTGAGTAGAGGAGCTCCCAGGCTCTATGGTCAAACTACCTCCCTCACCCACTATgtccaggacctgaagcaagggaGCAGCTTCCCTTCCCTGGCTTTCAAGGGACCAATGGAGATCTCTGCCCGGTCAATTTCCACTCCTGACCGTGAAGTTCCCTCAAGTGCTTCTTCACAAACTTCATTTAGACCAGGTCCTCTGAGTTTTGGTTCTACTGAAGGTGGGAGTGCAACAAACAGCTACAAGCCTAGCTTCTCCCAAGATGTCATGCAATACCAGAGCAACTCTGCCAGTAGAAGTGTTTCAACTTCCAATCAATATGCCCAAACCTCTGGCCAGAGAATAGCTGGAGCCTCTACCTCAAGTCGCGGCATGCCCACTTCTAGCCTGGCCTCTCGCTCCAGTCTTTTTCGCCCCAGCTCTACAGCTAGTGGAAACTCCTATGGCGCCTACAAGCCTGGCTCTGACCTTGGTGCAAGCCCAAGCCTGTTTGACTCTAACCAAGGTGGAAGGGGTTCAACATACAGCCAGAATCTCCTTGCAAAACCTGCCCAAGGGAAGTACGGACAAATGTCTGCTCAGTGGGGGAGCTACCAGCCCAGCTATGCTGCCAGTAGTGGGCCAGTCTCCAGCCTCTTCAGTTCTACCCAGGCTGCCAGTTCTTCAACATTCATCCAGAATGCTCCTGCCACAGCCCAGAAGCCAAGTGGCTCTAAACCTGTCCCCAGTCAACGCTATCAGCCCAGCTATTTGTTCAATGCAGTGAAGTCCAACACAGAGCCTCTTGTCTAGCAGCTATGGCCCTACCCAGAGCAGGACCGGCAGTGCCAGCTCGATCAACCCTCGCCGCTTTGCCCTGACCATCATGCACAGCATCCCAGAATTGTACGGCGGATCTACAATCCACCGGCTCAAAGACCCTACTCGGTAGGAGTAGTGCCTCCCCTAGCCACTCAACCCAGCTCTTCAAGTGTCAGCAAGCCACAGCCAAACCACTATCTGCCAAGCAGAAAGGCCCTAGCACAACCTAAATTGAGTCCAGAGCTTTAGGGGAGTCCAGAACATGACGAAGTGGGATCTGTAGCCACCAGTTGAGGTGCTGTGACCTGGAAGTGTTGTCAGGACTTCTCTACTTCAATTGTTTTAAATAAAATGTACTAATACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1779478 lncRNA downstream 27704 47220732 ~ 47220956 (-) True G1555331
TU1779455 lncRNA downstream 53154 47190003 ~ 47195506 (-) True G1555314
TU1779447 lncRNA downstream 74148 47174235 ~ 47174512 (-) True G1555306
TU1779446 lncRNA downstream 74939 47173512 ~ 47173721 (-) True G1555305
TU1779442 lncRNA downstream 82663 47165782 ~ 47165997 (-) True G1555301
TU1779643 lncRNA upstream 48357 47299281 ~ 47299510 (-) True G1555454
TU1779645 lncRNA upstream 50258 47301182 ~ 47301528 (-) True G1555456
TU1779647 lncRNA upstream 52919 47303843 ~ 47304298 (-) True G1555458
TU1779656 lncRNA upstream 70222 47321146 ~ 47324211 (-) False G1555467
TU1779660 lncRNA upstream 70222 47321146 ~ 47324211 (-) False G1555467
XM_036952954.1 mRNA downstream 7222 47239132 ~ 47241438 (-) True LOC118941173
XM_036952955.1 mRNA downstream 7265 47239132 ~ 47241395 (-) False LOC118941173
XM_036951067.1 mRNA downstream 19917 47224996 ~ 47228743 (-) True LOC118940995
XM_036952952.1 mRNA downstream 85833 47157965 ~ 47162827 (-) True LOC110496387
XM_036952951.1 mRNA downstream 94883 47148292 ~ 47153777 (-) True LOC110496386
XM_036952963.1 mRNA upstream 7226 47258150 ~ 47260418 (-) False LOC118941176
XM_036952962.1 mRNA upstream 7226 47258150 ~ 47260435 (-) False LOC118941176
XM_036952961.1 mRNA upstream 7226 47258150 ~ 47292208 (-) True LOC118941176
XM_021572268.2 mRNA upstream 76025 47326949 ~ 47328359 (-) True LOC110496393
XM_021572276.2 mRNA upstream 385597 47636521 ~ 47647411 (-) True LOC110496398
TU1779304 other downstream 335745 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 1140558 46101248 ~ 46108102 (-) True G1554091
TU1777652 other downstream 1445612 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 1456527 45788099 ~ 45792133 (-) False G1553693
TU1777490 other downstream 1580920 45667361 ~ 45667740 (-) True G1553544
TU1779770 other upstream 292636 47543560 ~ 47546571 (-) False G1555543
TU1780537 other upstream 653915 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 731959 47982883 ~ 47983609 (-) True LOC110496401
TU1780876 other upstream 1105689 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 2716972 49967896 ~ 49968608 (-) True G1558535