RNA id: XM_036952963.1


Basic Information

Item Value
RNA id XM_036952963.1
length 1877
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC118941176
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47258150 ~ 47292208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAAGCATGGCAGTAAGGCACTGAGCTACTAATTGCGGAGTTTTGCGTTGTCTGGGCTGTTGGTGGTTTAAGGCTTTGATATGGCTTTTGGAATTAATTTGGGAACACTCCAGTTTTACATGGGCTCCACGTGATGCCCAGAGAGTAAGAGGCTATGGGTTTTCTGGCTCTTCCAGAATGGAAGTTGAGCAGAGGAAAACAGGTGGCAGCTATCCCCAGGATCAATTCAGACCAGCCTCTCACACTTCTGGTTCGGTCCAGAGAGAAGCTACTTACCGCGGGACTGGCTACAACACACTCGGAGGCTTTGCTTCAAGCTCCCTCCAGCCAGCCCCAAGGGGCTCTGGATCTATCCCCAGCAGCTTTACCTCCGCCCAGACAAAGGGTAAGAGGACCCGTGCCAAGAATACTGACATTAGCCTCTCTGGTTCTATAGCCAGTGGATCCTCTGTCACCCACAACAAGCATCAAACCAAGGCCAGCAGAACCTATGGTCAAAGTGTCACTGACCCCAGTGCATTAAGGCCAGTTTCAAGTTGGGAGGTAAAGCGAATCCAGGCCAACACTCTTCGTACTGTACAGCCTCACTCCGGCAGCTCTGGACTAGTCCAGAATCCTGATGTTGTGTTTAATGTCCAGAGTAGAACTGCCTCTAACCTGAAACCATCTACTCCTAACTATGGCTCTACCCAGAGCGAATTTGTCCAGACTCTGAGTAGAGGAGCTCCCAGGCTCTATGGTCAAACTACCTCCCTCACCCACTATgtccaggacctgaagcaagggaGCAGCTTCCCTTCCCTGGCTTTCAAGGGACCAATGGAGATCTCTGCCCGGTCAATTTCCACTCCTGACCGTGAAGTTCCCTCAAGTGCTTCTTCACAAACTTCATTTAGACCAGGTCCTCTGAGTTTTGGTTCTACTGAAGGTGGGAGTGCAACAAACAGCTACAAGCCTAGCTTCTCCCAAGATGTCATGCAATACCAGAGCAACTCTGCCAGTAGAAGTGTTTCAACTTCCAATCAATATGCCCAAACCTCTGGCCAGAGAATAGCTGGAGCCTCTACCTCAAGTCGCGGCATGCCCACTTCTAGCCTGGCCTCTCGCTCCAGTCTTTTTCGCCCCAGCTCTACAGCTAGTGGAAACTCCTATGGCGCCTACAAGCCTGGCTCTGACCTTGGTGCAAGCCCAAGCCTGTTTGCCTCTAACCAAGGTGGAAGGGGTTCAACATACAGCCAGAATCTCCTTGCAAAACCTGCCCAAGGGAAGTACGGACAAATGTCTGCTCAGTGGGGGAGCTACCAGCCCAGCTATGCTGCCAGTAGTGGGCCAGTCTCCAGCCTCTTCAGTTCTACCCAGGCTGCCAGTTCTTCAACATTCATCCAGAATGCTCCTGCCACAGCCCAGAAGCCAAGTGGCTCTAAACCTGTCCCCAGTCAACGCTATCAGCCCAGCTATTTGTTCAATGCAGTGAAGTCCAACACAGAGCCTCTTGTCTAGCAGCTATGGCCCTACCCAGAGCAGGACCGGCAGTGCCAGCTCGATCAACCCTCGCCGCTTTGCCCTGACCATCATGCACAGCATCCCAGAATTGTACGGCGGATCTACAATCCACCGGCTCAAAGACCCTACTCGGTAGGAGTAGTGCCTCCCCTAGCCACTCAACCCAGCTCTTCAAGTGTCAGCAAGCCACAGCCAAACCACTATCTGCCAAGCAGAAAGGCCCTAGCACAACCTAAATTGAGTCCAGAGCTTTAGGGGAGTCCAGAACATGACGAAGTGGGATCTGTAGCCACCAGTTGAGGTGCTGTGACCTGGAAGTGTTGTCAGGACTTCTCTACTTCAATTGTTTTAAATAAAATGTACTAATACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1779478 lncRNA downstream 37194 47220732 ~ 47220956 (-) True G1555331
TU1779455 lncRNA downstream 62644 47190003 ~ 47195506 (-) True G1555314
TU1779447 lncRNA downstream 83638 47174235 ~ 47174512 (-) True G1555306
TU1779446 lncRNA downstream 84429 47173512 ~ 47173721 (-) True G1555305
TU1779442 lncRNA downstream 92153 47165782 ~ 47165997 (-) True G1555301
TU1779643 lncRNA upstream 38863 47299281 ~ 47299510 (-) True G1555454
TU1779645 lncRNA upstream 40764 47301182 ~ 47301528 (-) True G1555456
TU1779647 lncRNA upstream 43425 47303843 ~ 47304298 (-) True G1555458
TU1779656 lncRNA upstream 60728 47321146 ~ 47324211 (-) False G1555467
TU1779660 lncRNA upstream 60728 47321146 ~ 47324211 (-) False G1555467
XM_036952956.1 mRNA downstream 7183 47248660 ~ 47250967 (-) True LOC118941174
XM_036952957.1 mRNA downstream 7226 47248660 ~ 47250924 (-) False LOC118941174
XM_036952954.1 mRNA downstream 16712 47239132 ~ 47241438 (-) True LOC118941173
XM_036952955.1 mRNA downstream 16755 47239132 ~ 47241395 (-) False LOC118941173
XM_036951067.1 mRNA downstream 29407 47224996 ~ 47228743 (-) True LOC118940995
XM_021572268.2 mRNA upstream 66531 47326949 ~ 47328359 (-) True LOC110496393
XM_021572276.2 mRNA upstream 376103 47636521 ~ 47647411 (-) True LOC110496398
LOC110496399 mRNA upstream 546661 47807079 ~ 47808361 (-) True LOC110496399
XM_036951068.1 mRNA upstream 630162 47890580 ~ 47927015 (-) False LOC110496837
XM_021572278.2 mRNA upstream 722308 47982726 ~ 47986560 (-) False LOC110496401
TU1779304 other downstream 345235 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 1150048 46101248 ~ 46108102 (-) True G1554091
TU1777652 other downstream 1455102 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 1466017 45788099 ~ 45792133 (-) False G1553693
TU1777490 other downstream 1590410 45667361 ~ 45667740 (-) True G1553544
TU1779770 other upstream 283142 47543560 ~ 47546571 (-) False G1555543
TU1780537 other upstream 644421 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 722465 47982883 ~ 47983609 (-) True LOC110496401
TU1780876 other upstream 1096195 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 2707478 49967896 ~ 49968608 (-) True G1558535

Expression Profile